Rosetta  2021.16
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PsiPredInterface.cc File Reference
#include <core/io/external/PsiPredInterface.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/Pose.hh>
#include <basic/Tracer.hh>
#include <utility>
#include <utility/io/izstream.hh>
#include <utility/file/file_sys_util.hh>

Namespaces

 core
 A class for reading in the atom type properties.
 
 core::io
 
 core::io::external
 

Functions

static basic::Tracer TR ("core.io.external.psipredinterface")
 
void core::io::external::runpsipred_name_mangle_check (std::string &filename, std::string const &ref_filename, std::string const &extension)
 
utility::vector1< core::Realcore::io::external::generate_prob (PsiPredResult const &psipred_result, std::string desired_ss)
 generates scores for each residue based on psipred confidence and the desired secondary structure More...
 
utility::vector1< core::Sizecore::io::external::nonmatching_residues (std::string const &blueprint_ss, std::string const &pred_ss)
 finds which positions in the blueprint and predicted secondary structure string don't match returns a vector of the residue numbers More...
 

Function Documentation

static basic::Tracer TR ( "core.io.external.psipredinterface"  )
static