core::pose::copydofs::CopyDofs Class Reference

#include <CopyDofs.hh>

Inheritance diagram for core::pose::copydofs::CopyDofs:

Public Member Functions
	CopyDofs (pose::MiniPose const &template_pose, std::map< id::AtomID, id::AtomID > const &atom_id_map, std::map< id::AtomID, Size > const &atom_id_domain_map)
	CopyDofs (pose::MiniPose const &template_pose, std::map< id::AtomID, id::AtomID > const &atom_id_map)
	CopyDofs (pose::MiniPose const &template_pose, std::map< id::AtomID, id::AtomID > const &atom_id_map, Size const default_domain)
	~CopyDofs () override
void	apply (pose::Pose &pose)
void	figure_out_dofs (pose::Pose &pose)
CopyDofsInfo	copy_dofs_info () const

Private Member Functions
bool	get_scratch_atom_id (id::AtomID &other_scratch_atom_id, std::map< core::id::AtomID, core::id::AtomID > const &atom_id_map, core::kinematics::tree::AtomCOP other_atom)
bool	check_domain_map (std::map< id::AtomID, Size > const &atom_id_domain_map, id::AtomID const &atom_id1, id::AtomID const &atom_id2) const
bool	check_domain_map (std::map< id::AtomID, Size > const &atom_id_domain_map, utility::vector1< id::AtomID > const &atom_ids1, utility::vector1< id::AtomID > const &atom_ids2) const

Private Attributes
pose::MiniPose const &	scratch_pose_
std::map< id::AtomID, id::AtomID > const &	atom_id_map_
std::map< id::AtomID, Size >	atom_id_domain_map_
CopyDofsInfo	copy_dofs_info_
int	default_domain_ = -1

Constructor & Destructor Documentation

CopyDofs() [1/3]

core::pose::copydofs::CopyDofs::CopyDofs	(	pose::MiniPose const &	template_pose,
		std::map< id::AtomID, id::AtomID > const &	atom_id_map,
		std::map< id::AtomID, Size > const &	atom_id_domain_map
	)

CopyDofs() [2/3]

core::pose::copydofs::CopyDofs::CopyDofs	(	pose::MiniPose const &	template_pose,
		std::map< id::AtomID, id::AtomID > const &	atom_id_map
	)

CopyDofs() [3/3]

core::pose::copydofs::CopyDofs::CopyDofs	(	pose::MiniPose const &	template_pose,
		std::map< id::AtomID, id::AtomID > const &	atom_id_map,
		Size const	default_domain
	)

~CopyDofs()

core::pose::copydofs::CopyDofs::~CopyDofs ( )

overridedefault

Member Function Documentation

apply()

void core::pose::copydofs::CopyDofs::apply

(

pose::Pose &

pose

)

References core::pose::copydofs::apply_dofs(), copy_dofs_info_, and figure_out_dofs().

check_domain_map() [1/2]

bool core::pose::copydofs::CopyDofs::check_domain_map ( std::map< id::AtomID, Size > const &  atom_id_domain_map, id::AtomID const &  atom_id1, id::AtomID const &  atom_id2  ) const

private

References core::pose::copydofs::FIXED_DOMAIN.

Referenced by check_domain_map(), and figure_out_dofs().

check_domain_map() [2/2]

bool core::pose::copydofs::CopyDofs::check_domain_map ( std::map< id::AtomID, Size > const &  atom_id_domain_map, utility::vector1< id::AtomID > const &  atom_ids1, utility::vector1< id::AtomID > const &  atom_ids2  ) const

private

References check_domain_map().

copy_dofs_info()

CopyDofsInfo core::pose::copydofs::CopyDofs::copy_dofs_info ( ) const

inline

References copy_dofs_info_.

figure_out_dofs()

void core::pose::copydofs::CopyDofs::figure_out_dofs

(

pose::Pose &

pose

)

References core::kinematics::AtomTree::atom_dont_do_update(), atom_id_domain_map_, atom_id_map_, core::conformation::Residue::atom_name(), core::pose::Pose::atom_tree(), core::id::AtomID::atomno(), check_domain_map(), core::pose::copydofs::CopyDofsInfo::clear(), copy_dofs_info_, core::id::D, default_domain_, core::pose::Pose::dof(), core::pose::copydofs::CopyDofsInfo::emplace_back(), get_scratch_atom_id(), core::kinematics::tree::Atom::get_self_ptr(), core::pose::Pose::jump(), core::conformation::Residue::name(), core::conformation::Residue::name1(), core::chemical::rings::PHI, core::pose::Pose::residue(), core::id::AtomID::rsd(), scratch_pose_, core::chemical::rings::THETA, core::pose::Pose::xyz(), and core::pose::MiniPose::xyz().

Referenced by apply().

get_scratch_atom_id()

bool core::pose::copydofs::CopyDofs::get_scratch_atom_id ( id::AtomID &  other_scratch_atom_id, std::map< core::id::AtomID, core::id::AtomID > const &  atom_id_map, core::kinematics::tree::AtomCOP  other_atom  )

private

Referenced by figure_out_dofs().

Member Data Documentation

atom_id_domain_map_

std::map< id::AtomID, Size > core::pose::copydofs::CopyDofs::atom_id_domain_map_

private

Referenced by figure_out_dofs().

atom_id_map_

std::map< id::AtomID, id::AtomID > const& core::pose::copydofs::CopyDofs::atom_id_map_

private

Referenced by figure_out_dofs().

copy_dofs_info_

CopyDofsInfo core::pose::copydofs::CopyDofs::copy_dofs_info_

private

Referenced by apply(), copy_dofs_info(), and figure_out_dofs().

default_domain_

int core::pose::copydofs::CopyDofs::default_domain_ = -1

private

Referenced by figure_out_dofs().

scratch_pose_

pose::MiniPose const& core::pose::copydofs::CopyDofs::scratch_pose_

private

Referenced by figure_out_dofs().

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The documentation for this class was generated from the following files:

• src/core/pose/copydofs/CopyDofs.hh
• src/core/pose/copydofs/CopyDofs.cc