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#include <protocols/fldsgn/potentials/sspot/util.hh>
#include <core/pose/Pose.hh>
#include <numeric/conversions.hh>
#include <numeric/trig.functions.hh>
#include <numeric/xyzVector.hh>
#include <utility/vector1.hh>
#include <core/conformation/Residue.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/Jump.hh>


 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.


using protocols::fldsgn::potentials::sspot::Real = core::Real
using protocols::fldsgn::potentials::sspot::Vector = core::Vector
using protocols::fldsgn::potentials::sspot::Pose = core::pose::Pose


void protocols::fldsgn::potentials::sspot::spherical (Vector const &a2, Vector const &a4, Real &phi, Real &theta, Vector const &cen1, Vector const &cen2, Vector const &v21)
Size protocols::fldsgn::potentials::sspot::get_foldtree_seqsep (Pose const &pose, core::Size pos1, core::Size pos2, core::Size gap_size)
 identifies the sequence separation along the fold tree lin the old way to calculate the sequence separation takes an asumption of no-break chain lin when there is chain break between pos1 and pos2, we add a gap to make a correct calculation in ss energy More...

Detailed Description

Nobuyasu Koga ( nobuy.nosp@m.asu@.nosp@m.u.was.nosp@m.hing.nosp@m.ton.e.nosp@m.du )