#include <ConservedPosMutationFilter.hh>

Inheritance diagram for protocols::calc_taskop_filters::ConservedPosMutationFilter:

Public Types
typedef filters::Filter	parent

typedef filters::Filter	Filter

typedef filters::FilterOP	FilterOP

Public Member Functions
	ConservedPosMutationFilter ()

	~ConservedPosMutationFilter () override

FilterOP	clone () const override

FilterOP	fresh_instance () const override

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...

bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. In this case, a pose passes if it less than max_allowed_conserved_pos_mutations_ mutations at conserved position. the decision whether a given position counts as conserved is made by the RestrictConservedLowDdgOperation task operation to prevent duplication of code. More...

void	set_max_allowed_conserved_pos_mutations (core::Size value)

std::string	name () const override

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	~Filter () override

virtual void	report (std::ostream &, core::pose::Pose const &) const

virtual core::Real	report_sm (core::pose::Pose const &) const
	used to report filter internals through a score or silent file More...

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
task_operations::RestrictConservedLowDdgOperationOP	conserved_pos_taskop_

core::Size	max_allowed_conserved_pos_mutations_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

◆ Filter

typedef filters::Filter protocols::calc_taskop_filters::ConservedPosMutationFilter::Filter

◆ FilterOP

typedef filters::FilterOP protocols::calc_taskop_filters::ConservedPosMutationFilter::FilterOP

◆ parent

typedef filters::Filter protocols::calc_taskop_filters::ConservedPosMutationFilter::parent

Constructor & Destructor Documentation

◆ ConservedPosMutationFilter()

protocols::calc_taskop_filters::ConservedPosMutationFilter::ConservedPosMutationFilter ( )

◆ ~ConservedPosMutationFilter()

protocols::calc_taskop_filters::ConservedPosMutationFilter::~ConservedPosMutationFilter ( )

overridedefault

Member Function Documentation

◆ apply()

bool protocols::calc_taskop_filters::ConservedPosMutationFilter::apply ( core::pose::Pose const & pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise. In this case, a pose passes if it less than max_allowed_conserved_pos_mutations_ mutations at conserved position. the decision whether a given position counts as conserved is made by the RestrictConservedLowDdgOperation task operation to prevent duplication of code.

Implements protocols::filters::Filter.

References core::chemical::ResidueTypeBase::aa(), conserved_pos_taskop_, core::chemical::ResidueTypeBase::is_protein(), max_allowed_conserved_pos_mutations_, core::chemical::oneletter_code_from_aa(), core::pose::Pose::residue_type(), core::pose::Pose::size(), core::id::to_string(), and tr().