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protocols::docking::DockingEnsemblePrepackProtocol Member List

This is the complete list of members for protocols::docking::DockingEnsemblePrepackProtocol, including all inherited members.

add_additional_task_operaration(core::pack::task::operation::TaskOperationOP task_operation)protocols::docking::DockingHighRes
apply(core::pose::Pose &) overrideprotocols::docking::DockingEnsemblePrepackProtocolvirtual
check_ensemble_member_compatibility()protocols::docking::DockingEnsemblePrepackProtocol
clear_info()protocols::moves::Moverinlinevirtual
clone() constprotocols::moves::Movervirtual
copy_ensemble(std::string const &inputfile_name)protocols::docking::DockingEnsemblePrepackProtocolinlineprivate
create()protocols::moves::Movervirtual
current_job_protocols::moves::Moverprivate
current_tag_protocols::moves::Moverprivate
DockingEnsemblePrepackProtocol()protocols::docking::DockingEnsemblePrepackProtocol
DockingHighRes()protocols::docking::DockingHighRes
DockingHighRes(core::Size const rb_jump)protocols::docking::DockingHighRes
DockingHighRes(core::Size const rb_jump, core::scoring::ScoreFunctionOP scorefxn)protocols::docking::DockingHighRes
DockingHighRes(core::Size const rb_jump, core::scoring::ScoreFunctionOP scorefxn, core::scoring::ScoreFunctionOP scorefxn_pack)protocols::docking::DockingHighRes
DockingHighRes(DockJumps const movable_jumps, core::scoring::ScoreFunctionOP scorefxn, core::scoring::ScoreFunctionOP scorefxn_pack)protocols::docking::DockingHighRes
DockingHighRes(DockingHighRes const &old_instance)protocols::docking::DockingHighRes
ensemble1_protocols::docking::DockingEnsemblePrepackProtocolprivate
ensemble1_filename_protocols::docking::DockingEnsemblePrepackProtocolprivate
ensemble2_protocols::docking::DockingEnsemblePrepackProtocolprivate
ensemble2_filename_protocols::docking::DockingEnsemblePrepackProtocolprivate
finalize_setup(core::pose::Pose &)protocols::docking::DockingEnsemblePrepackProtocolprivate
fresh_instance() constprotocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_additional_task_operarations()protocols::docking::DockingHighRes
get_current_job() constprotocols::moves::Mover
get_current_tag() constprotocols::moves::Moverinline
get_input_pose() constprotocols::moves::Mover
get_last_move_status() constprotocols::moves::Mover
get_name() const overrideprotocols::docking::DockingEnsemblePrepackProtocolvirtual
get_native_pose() constprotocols::moves::Mover
get_partners() constprotocols::docking::DockingHighResinline
get_pose_chains(core::pose::Pose &)protocols::docking::DockingEnsemblePrepackProtocol
get_self_ptr() constprotocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() constprotocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() constprotocols::moves::Moverinline
ignore_default_task()protocols::docking::DockingHighRes
ignore_default_task_protocols::docking::DockingHighResprivate
info()protocols::moves::Moverinlinevirtual
info() constprotocols::moves::Moverinlinevirtual
info_protocols::moves::Moverprivate
init(DockJumps const movable_jumps)protocols::docking::DockingHighResprivate
init_from_options()protocols::docking::DockingEnsemblePrepackProtocolprivate
input_pose_protocols::moves::Moverprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
last_status_protocols::moves::Moverprivate
membrane_protocols::docking::DockingEnsemblePrepackProtocolprivate
movable_jumps()protocols::docking::DockingHighResinline
movable_jumps() constprotocols::docking::DockingHighResinline
movable_jumps_protocols::docking::DockingHighResprivate
move_away(core::pose::Pose &pose)protocols::docking::DockingEnsemblePrepackProtocol
move_back(core::pose::Pose &pose)protocols::docking::DockingEnsemblePrepackProtocol
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
movers_setup_protocols::docking::DockingEnsemblePrepackProtocolprivate
name()protocols::moves::Moverinlinestatic
native_pose_protocols::moves::Moverprivate
pack_operations_protocols::docking::DockingEnsemblePrepackProtocolprivate
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)protocols::moves::Movervirtual
partners()protocols::docking::DockingHighResinline
partners_protocols::docking::DockingHighResprivate
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
prepack_full_repack_protocols::docking::DockingEnsemblePrepackProtocolprivate
provide_citation_info(basic::citation_manager::CitationCollectionList &) constprotocols::moves::Movervirtual
Real typedefprotocols::docking::DockingHighResprivate
register_options()protocols::docking::DockingEnsemblePrepackProtocolprivate
reinitialize_for_each_job() constprotocols::moves::Movervirtual
reinitialize_for_new_input() constprotocols::moves::Movervirtual
reset_status()protocols::moves::Mover
rt_min()protocols::docking::DockingHighResinline
rt_min_protocols::docking::DockingHighResprivate
rtmin_mover_protocols::docking::DockingEnsemblePrepackProtocolprivate
sc_min()protocols::docking::DockingHighResinline
sc_min_protocols::docking::DockingHighResprivate
scmin_mover_protocols::docking::DockingEnsemblePrepackProtocolprivate
scorefxn() constprotocols::docking::DockingHighRes
scorefxn_protocols::docking::DockingHighResprivate
scorefxn_pack() constprotocols::docking::DockingHighRes
scorefxn_pack_protocols::docking::DockingHighResprivate
set_additional_task_operarations(utility::vector1< core::pack::task::operation::TaskOperationOP > additional_task_operations)protocols::docking::DockingHighRes
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_ensemble1(std::string const &ensemble1)protocols::docking::DockingEnsemblePrepackProtocol
set_ensemble2(std::string const &ensemble2)protocols::docking::DockingEnsemblePrepackProtocol
set_ignore_default_task(bool ignore_default_task)protocols::docking::DockingHighRes
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_interface_definition_task_operation(protocols::simple_task_operations::InterfaceTaskOperationOP interface_definition)protocols::docking::DockingHighRes
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_movable_jumps(DockJumps movable_jumps)protocols::docking::DockingHighResinline
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_partners(std::string partners)protocols::docking::DockingHighResinline
set_rt_min(bool rt_min)protocols::docking::DockingHighResinline
set_sc_min(bool sc_min)protocols::docking::DockingHighResinline
set_scorefxn(core::scoring::ScoreFunctionOP scorefxn)protocols::docking::DockingHighRes
set_scorefxn_pack(core::scoring::ScoreFunctionOP scorefxn_pack)protocols::docking::DockingHighRes
set_spanfile1(std::string const &spanfile1)protocols::docking::DockingEnsemblePrepackProtocol
set_spanfile2(std::string const &spanfile2)protocols::docking::DockingEnsemblePrepackProtocol
set_task_factory(core::pack::task::TaskFactoryCOP tf)protocols::docking::DockingHighRes
set_type(std::string const &setting)protocols::moves::Moverinline
setup_defaults()protocols::docking::DockingEnsemblePrepackProtocol
setup_pack_operation_movers()protocols::docking::DockingEnsemblePrepackProtocol
show(std::ostream &output=std::cout) constprotocols::moves::Movervirtual
span1_filename_protocols::docking::DockingEnsemblePrepackProtocolprivate
span2_filename_protocols::docking::DockingEnsemblePrepackProtocolprivate
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
task_factory()protocols::docking::DockingHighRes
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
tf2()protocols::docking::DockingHighResprotected
tf2_protocols::docking::DockingHighResprivate
tf_protocols::docking::DockingHighResprivate
trans_away_vec_protocols::docking::DockingEnsemblePrepackProtocolprivate
trans_back_vec_protocols::docking::DockingEnsemblePrepackProtocolprivate
trans_magnitude_protocols::docking::DockingEnsemblePrepackProtocolprivate
type(const std::string &type_in)protocols::moves::Moverinline
type() constprotocols::moves::Moverinline
type_protocols::moves::Moverprivate
~DockingEnsemblePrepackProtocol() overrideprotocols::docking::DockingEnsemblePrepackProtocol
~DockingHighRes() overrideprotocols::docking::DockingHighRes