protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo Class Reference

helper class to allow for removal of covalent constraints More...

#include <EnzConstraintParameters.hh>

Inheritance diagram for protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo:

Public Member Functions
	CovalentConnectionReplaceInfo (std::string const &resA_base_in, std::string const &resB_base_in, std::string const &resA_var_in, std::string const &resB_var_in, core::Size Apos_in, core::Size Bpos_in, core::chemical::ResidueTypeSetCOP restype_set_in)
	CovalentConnectionReplaceInfo (CovalentConnectionReplaceInfo const &other)
	~CovalentConnectionReplaceInfo () override
void	remove_covalent_connection_from_pose (core::pose::Pose &pose) const
void	remap_resid (core::id::SequenceMapping const &smap)

Private Attributes
std::string	resA_basename_
std::string	resB_basename_
std::string	resA_varname_
std::string	resB_varname_
core::Size	resA_seqpos_
core::Size	resB_seqpos_
core::chemical::ResidueTypeSetCOP	restype_set_

Detailed Description

helper class to allow for removal of covalent constraints

Constructor & Destructor Documentation

CovalentConnectionReplaceInfo() [1/2]

protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::CovalentConnectionReplaceInfo	(	std::string const &	resA_base_in,
		std::string const &	resB_base_in,
		std::string const &	resA_var_in,
		std::string const &	resB_var_in,
		core::Size	Apos_in,
		core::Size	Bpos_in,
		core::chemical::ResidueTypeSetCOP	restype_set_in
	)

CovalentConnectionReplaceInfo() [2/2]

protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::CovalentConnectionReplaceInfo

(

CovalentConnectionReplaceInfo const &

other

)

~CovalentConnectionReplaceInfo()

protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::~CovalentConnectionReplaceInfo ( )

overridedefault

Member Function Documentation

remap_resid()

void protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::remap_resid

(

core::id::SequenceMapping const &

smap

)

References resA_seqpos_, and resB_seqpos_.

remove_covalent_connection_from_pose()

void protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::remove_covalent_connection_from_pose

(

core::pose::Pose &

pose

)

const

References core::pose::add_variant_type_to_pose_residue(), core::chemical::ResidueProperties::get_list_of_variants(), core::chemical::ResidueProperties::get_variant_from_string(), core::chemical::ResidueTypeBase::properties(), protocols::toolbox::match_enzdes_util::replace_residue_keeping_all_atom_positions(), resA_basename_, resA_seqpos_, resA_varname_, resB_basename_, resB_seqpos_, resB_varname_, core::pose::Pose::residue_type(), and restype_set_.

Member Data Documentation

resA_basename_

std::string protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::resA_basename_

private

Referenced by remove_covalent_connection_from_pose().

resA_seqpos_

core::Size protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::resA_seqpos_

private

Referenced by remap_resid(), and remove_covalent_connection_from_pose().

resA_varname_

std::string protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::resA_varname_

private

Referenced by remove_covalent_connection_from_pose().

resB_basename_

std::string protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::resB_basename_

private

Referenced by remove_covalent_connection_from_pose().

resB_seqpos_

core::Size protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::resB_seqpos_

private

Referenced by remap_resid(), and remove_covalent_connection_from_pose().

resB_varname_

std::string protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::resB_varname_

private

Referenced by remove_covalent_connection_from_pose().

restype_set_

core::chemical::ResidueTypeSetCOP protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::restype_set_

private

Referenced by remove_covalent_connection_from_pose().

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The documentation for this class was generated from the following files:

• src/protocols/toolbox/match_enzdes_util/EnzConstraintParameters.hh
• src/protocols/toolbox/match_enzdes_util/EnzConstraintParameters.cc