Rosetta  2021.16
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util.cc File Reference
#include <core/pose/extra_pose_info_util.hh>
#include <protocols/splice/util.hh>
#include <protocols/splice/Splice.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <protocols/simple_moves/CutChainMover.hh>
#include <basic/Tracer.hh>
#include <utility/string_util.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <utility/vector1.hh>
#include <core/conformation/Residue.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/kinematics/MoveMap.hh>
#include <protocols/protein_interface_design/movers/AddChainBreak.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <boost/algorithm/string/predicate.hpp>
#include <core/scoring/ScoreFunction.hh>
#include <protocols/task_operations/ProteinInterfaceDesignOperation.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::splice
 

Functions

static basic::Tracer TR ("protocols.splice.util")
 Utility functions useful in Splice mover. More...
 
core::Size protocols::splice::nearest_to_entry_stop_on_pose (core::pose::Pose const &pose, core::pose::Pose const &template_pose, core::Size residue, std::string tail_segment, std::string protein_family, core::Size chain, std::string segment)
 
void protocols::splice::modify_dbase_with_compatible_backbones (utility::vector1< ResidueBBDofs > torsion_database, utility::vector1< core::Size > &dbase, utility::vector1< std::string > intersect_pdbs)
 
void protocols::splice::load_pdb_segments_from_pose_comments (core::pose::Pose const &pose, std::map< std::string, std::string > &pdb_segments)
 
core::Size protocols::splice::report_coordinate_constraints (core::pose::Pose const &pose)
 
void protocols::splice::report_designable_packable_residues (core::pack::task::TaskFactoryOP const tf, core::pose::Pose pose)
 
bool protocols::splice::calculate_rmsd (core::pose::Pose &pose, core::pose::Pose const &source_pose, core::Size total_residue_new, core::Size nearest_to_from, core::Size from_res, core::Real rms_A, core::Real rms_B)
 
void protocols::splice::min_seg (core::pose::Pose &pose, ResidueBBDofs dofs, bool debug, core::Size from_res, std::string tail_segment, core::Size cut_site, core::Size cut_vl_vh_after_llc, ResidueBBDofs tail_dofs, core::scoring::ScoreFunctionOP scorefxn, std::string segment_type)
 
utility::vector1
< numeric::xyzVector
< core::Real > > 
protocols::splice::coords (core::pose::Pose const &pose, utility::vector1< core::Size > const positions)
 
utility::vector1< core::Sizeprotocols::splice::find_residues_on_chain1_inside_interface (core::pose::Pose const &pose, core::Size chainNum)
 
std::string protocols::splice::parse_pdb_code (std::string pdb_file_name)
 
void protocols::splice::fix_chain_break_residue (core::pose::Pose &pose, SpliceManager splicemanager)
 
void protocols::splice::report_des_pack_res (core::pose::Pose const &pose, core::pack::task::TaskFactoryOP tf)
 

Function Documentation

static basic::Tracer TR ( "protocols.splice.util"  )
static

Utility functions useful in Splice mover.

Author
Gideon Lapidoth (glapi.nosp@m.doth.nosp@m.@gmai.nosp@m.l.co.nosp@m.m)