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GenericBondedPotential.cc File Reference
#include <core/scoring/GenericBondedPotential.hh>
#include <core/scoring/EnergyMap.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/Patch.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/AtomType.hh>
#include <core/chemical/MMAtomType.hh>
#include <core/chemical/ResidueConnection.hh>
#include <core/pose/Pose.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <core/conformation/Residue.hh>
#include <numeric/conversions.hh>
#include <numeric/constants.hh>
#include <numeric/deriv/distance_deriv.hh>
#include <numeric/deriv/angle_deriv.hh>
#include <numeric/deriv/dihedral_deriv.hh>
#include <core/scoring/DerivVectorPair.hh>
#include <utility/keys/Key3Tuple.hh>
#include <utility/keys/Key4Tuple.hh>
#include <basic/basic.hh>
#include <basic/Tracer.hh>
#include <math.h>
#include <iostream>
#include <core/kinematics/Jump.hh>
#include <utility/io/izstream.hh>
#include <utility/string_util.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <basic/database/open.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/corrections.OptionKeys.gen.hh>

Classes

class  core::scoring::BondOrderParser
 

Namespaces

 core
 A class for reading in the atom type properties.
 
 core::scoring
 

Enumerations

enum  core::scoring::ReadMode {
  core::scoring::rmNONE, core::scoring::rmATOM, core::scoring::rmBOND, core::scoring::rmANGLE,
  core::scoring::rmTORSION, core::scoring::rmIMPROPER
}
 

Functions

static basic::Tracer core::scoring::TR ("core.scoring.GenericBondedPotential")
 
uint64_t core::scoring::get_parameter_hash (Size bondtypr, Size type1, Size type2, Size type3=0, Size type4=0)
 compress 5 values into one unsigned int; use 12 bits for each More...
 
core::Size core::scoring::bin_from_bond (core::chemical::BondName bn, core::chemical::BondRingness br)
 convert a bond type to a bin index More...
 
utility::vector1< core::Sizecore::scoring::bondorders_map (std::string bt)
 helper function to convert string specification of bondorders to indices More...