#include <InterfacePackingFilter.hh>
Public Member Functions | |
| InterfacePackingFilter () | |
| default ctor More... | |
| bool | apply (core::pose::Pose const &pose) const override |
| Returns true if the given pose passes the filter, false otherwise. More... | |
| void | report (std::ostream &out, core::pose::Pose const &pose) const override |
| core::Real | report_sm (core::pose::Pose const &pose) const override |
| used to report filter internals through a score or silent file More... | |
| protocols::filters::FilterOP | clone () const override |
| protocols::filters::FilterOP | fresh_instance () const override |
| core::Real | compute (core::pose::Pose const &pose) const |
| ~InterfacePackingFilter () override | |
| void | parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override |
| Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More... | |
| core::Real | distance_cutoff () const |
| core::Real | contact_dist () const |
| core::Real | lower_threshold () const |
| core::Real | upper_threshold () const |
| bool | multicomp () const |
| std::string | sym_dof_names () const |
| void | distance_cutoff (core::Real const d) |
| void | contact_dist (core::Real const c) |
| void | lower_threshold (core::Real const l) |
| void | upper_threshold (core::Real const u) |
| void | sym_dof_names (std::string const s) |
| void | multicomp (bool const multicomp) |
| std::string | name () const override |
 Public Member Functions inherited from protocols::filters::Filter | |
| Filter () | |
| Filter (std::string const &) | |
| ~Filter () override | |
| virtual std::string | get_type () const |
| std::string | get_user_defined_name () const |
| void | set_user_defined_name (std::string const &name) |
| virtual void | clear () |
| used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More... | |
| virtual core::Real | score (core::pose::Pose &pose) |
| virtual void | provide_citation_info (basic::citation_manager::CitationCollectionList &) const |
| Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More... | |
Static Public Member Functions | |
| static std::string | class_name () |
| static void | provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd) |
Private Types | |
| typedef protocols::filters::Filter | parent |
Private Attributes | |
| core::Real | distance_cutoff_ |
| core::Real | contact_dist_ |
| core::Real | lower_threshold_ |
| core::Real | upper_threshold_ |
| bool | multicomp_ |
| std::string | sym_dof_names_ |
Additional Inherited Members | |
| Protected Attributes inherited from protocols::filters::Filter | |
| std::string | scorename_ |
Member Typedef Documentation
◆ parent
Constructor & Destructor Documentation
◆ InterfacePackingFilter()
| protocols::matdes::InterfacePackingFilter::InterfacePackingFilter | ( | ) |
default ctor
◆ ~InterfacePackingFilter()
|
overridedefault |
Member Function Documentation
◆ apply()
|
overridevirtual |
Returns true if the given pose passes the filter, false otherwise.
Implements protocols::filters::Filter.
References compute(), lower_threshold_, protocols::matdes::TR(), and upper_threshold_.
◆ class_name()
|
static |
Referenced by protocols::matdes::InterfacePackingFilterCreator::keyname(), name(), and provide_xml_schema().
◆ clone()
|
overridevirtual |
Implements protocols::filters::Filter.
◆ compute()
| core::Real protocols::matdes::InterfacePackingFilter::compute | ( | core::pose::Pose const & | pose | ) | const |
References core::scoring::packing::HolesResult::atom_scores, core::scoring::packing::compute_holes_score(), contact_dist_, distance_cutoff_, core::pose::Pose::fold_tree(), core::pose::symmetry::get_buildingblock_and_neighbor_subs(), core::pose::symmetry::get_intracomponent_and_neighbor_resis(), core::pose::symmetry::get_sym_aware_jump_num(), multicomp_, core::kinematics::FoldTree::partition_by_jump(), core::pose::symmetry::partition_by_symm_jumps(), core::io::pose_from_pose(), core::pose::Pose::residue(), core::pose::Pose::size(), protocols::loops::start, core::pose::symmetry::sym_dof_jump_num(), sym_dof_names_, core::pose::symmetry::symmetry_info(), protocols::matdes::TR(), and core::conformation::Residue::xyz().
Referenced by apply(), report(), and report_sm().
◆ contact_dist() [1/2]
| core::Real protocols::matdes::InterfacePackingFilter::contact_dist | ( | ) | const |
References contact_dist_.
Referenced by parse_my_tag().
◆ contact_dist() [2/2]
| void protocols::matdes::InterfacePackingFilter::contact_dist | ( | core::Real const | c | ) |
References contact_dist_.
◆ distance_cutoff() [1/2]
| core::Real protocols::matdes::InterfacePackingFilter::distance_cutoff | ( | ) | const |
References distance_cutoff_.
Referenced by parse_my_tag().
◆ distance_cutoff() [2/2]
| void protocols::matdes::InterfacePackingFilter::distance_cutoff | ( | core::Real const | d | ) |
References distance_cutoff_.
◆ fresh_instance()
|
overridevirtual |
Implements protocols::filters::Filter.
◆ lower_threshold() [1/2]
| core::Real protocols::matdes::InterfacePackingFilter::lower_threshold | ( | ) | const |
References lower_threshold_.
Referenced by parse_my_tag().
◆ lower_threshold() [2/2]
| void protocols::matdes::InterfacePackingFilter::lower_threshold | ( | core::Real const | l | ) |
References lower_threshold_.
◆ multicomp() [1/2]
| bool protocols::matdes::InterfacePackingFilter::multicomp | ( | ) | const |
References multicomp_.
Referenced by parse_my_tag().
◆ multicomp() [2/2]
| void protocols::matdes::InterfacePackingFilter::multicomp | ( | bool const | multicomp | ) |
References multicomp_.
◆ name()
|
overridevirtual |
Reimplemented from protocols::filters::Filter.
References class_name().
◆ parse_my_tag()
|
overridevirtual |
Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.
Reimplemented from protocols::filters::Filter.
References contact_dist(), distance_cutoff(), lower_threshold(), multicomp(), sym_dof_names(), protocols::matdes::TR(), and upper_threshold().
◆ provide_xml_schema()
|
static |
References class_name(), and protocols::filters::xsd_type_definition_w_attributes().
Referenced by protocols::matdes::InterfacePackingFilterCreator::provide_xml_schema().
◆ report()
|
overridevirtual |
Reimplemented from protocols::filters::Filter.
References compute(), and core::conformation::membrane::out.
◆ report_sm()
|
overridevirtual |
used to report filter internals through a score or silent file
Reimplemented from protocols::filters::Filter.
References compute().
◆ sym_dof_names() [1/2]
| std::string protocols::matdes::InterfacePackingFilter::sym_dof_names | ( | ) | const |
References sym_dof_names_.
Referenced by parse_my_tag().
◆ sym_dof_names() [2/2]
| void protocols::matdes::InterfacePackingFilter::sym_dof_names | ( | std::string const | s | ) |
References sym_dof_names_.
◆ upper_threshold() [1/2]
| core::Real protocols::matdes::InterfacePackingFilter::upper_threshold | ( | ) | const |
References upper_threshold_.
Referenced by parse_my_tag().
◆ upper_threshold() [2/2]
| void protocols::matdes::InterfacePackingFilter::upper_threshold | ( | core::Real const | u | ) |
References protocols::hybridization::u, and upper_threshold_.
Member Data Documentation
◆ contact_dist_
|
private |
Referenced by compute(), and contact_dist().
◆ distance_cutoff_
|
private |
Referenced by compute(), and distance_cutoff().
◆ lower_threshold_
|
private |
Referenced by apply(), and lower_threshold().
◆ multicomp_
|
private |
Referenced by compute(), and multicomp().
◆ sym_dof_names_
|
private |
Referenced by compute(), and sym_dof_names().
◆ upper_threshold_
|
private |
Referenced by apply(), and upper_threshold().
The documentation for this class was generated from the following files:
- src/protocols/matdes/InterfacePackingFilter.hh
- src/protocols/matdes/InterfacePackingFilter.cc
