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Public Member Functions | Static Public Member Functions | Private Types | Private Attributes | List of all members
protocols::matdes::InterfacePackingFilter Class Reference

#include <InterfacePackingFilter.hh>

Inheritance diagram for protocols::matdes::InterfacePackingFilter:
Inheritance graph
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Public Member Functions

 InterfacePackingFilter ()
 default ctor More...
 
bool apply (core::pose::Pose const &pose) const override
 Returns true if the given pose passes the filter, false otherwise. More...
 
void report (std::ostream &out, core::pose::Pose const &pose) const override
 
core::Real report_sm (core::pose::Pose const &pose) const override
 used to report filter internals through a score or silent file More...
 
protocols::filters::FilterOP clone () const override
 
protocols::filters::FilterOP fresh_instance () const override
 
core::Real compute (core::pose::Pose const &pose) const
 
 ~InterfacePackingFilter () override
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
 Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
 
core::Real distance_cutoff () const
 
core::Real contact_dist () const
 
core::Real lower_threshold () const
 
core::Real upper_threshold () const
 
bool multicomp () const
 
std::string sym_dof_names () const
 
void distance_cutoff (core::Real const d)
 
void contact_dist (core::Real const c)
 
void lower_threshold (core::Real const l)
 
void upper_threshold (core::Real const u)
 
void sym_dof_names (std::string const s)
 
void multicomp (bool const multicomp)
 
std::string name () const override
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
 ~Filter () override
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Private Types

typedef protocols::filters::Filter parent
 

Private Attributes

core::Real distance_cutoff_
 
core::Real contact_dist_
 
core::Real lower_threshold_
 
core::Real upper_threshold_
 
bool multicomp_
 
std::string sym_dof_names_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::matdes::InterfacePackingFilter::InterfacePackingFilter ( )

default ctor

protocols::matdes::InterfacePackingFilter::~InterfacePackingFilter ( )
overridedefault

Member Function Documentation

bool protocols::matdes::InterfacePackingFilter::apply ( core::pose::Pose const &  pose) const
overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), lower_threshold_, protocols::matdes::TR(), and upper_threshold_.

std::string protocols::matdes::InterfacePackingFilter::class_name ( )
static
protocols::filters::FilterOP protocols::matdes::InterfacePackingFilter::clone ( ) const
overridevirtual
core::Real protocols::matdes::InterfacePackingFilter::compute ( core::pose::Pose const &  pose) const
core::Real protocols::matdes::InterfacePackingFilter::contact_dist ( ) const

References contact_dist_.

Referenced by parse_my_tag().

void protocols::matdes::InterfacePackingFilter::contact_dist ( core::Real const  c)
core::Real protocols::matdes::InterfacePackingFilter::distance_cutoff ( ) const

References distance_cutoff_.

Referenced by parse_my_tag().

void protocols::matdes::InterfacePackingFilter::distance_cutoff ( core::Real const  d)

References distance_cutoff_.

protocols::filters::FilterOP protocols::matdes::InterfacePackingFilter::fresh_instance ( ) const
overridevirtual
core::Real protocols::matdes::InterfacePackingFilter::lower_threshold ( ) const

References lower_threshold_.

Referenced by parse_my_tag().

void protocols::matdes::InterfacePackingFilter::lower_threshold ( core::Real const  l)

References lower_threshold_.

bool protocols::matdes::InterfacePackingFilter::multicomp ( ) const

References multicomp_.

Referenced by parse_my_tag().

void protocols::matdes::InterfacePackingFilter::multicomp ( bool const  multicomp)

References multicomp_.

std::string protocols::matdes::InterfacePackingFilter::name ( ) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::matdes::InterfacePackingFilter::parse_my_tag ( utility::tag::TagCOP  ,
basic::datacache::DataMap &   
)
overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References contact_dist(), distance_cutoff(), lower_threshold(), multicomp(), sym_dof_names(), protocols::matdes::TR(), and upper_threshold().

void protocols::matdes::InterfacePackingFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::matdes::InterfacePackingFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::matdes::InterfacePackingFilter::report_sm ( core::pose::Pose const &  ) const
overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

std::string protocols::matdes::InterfacePackingFilter::sym_dof_names ( ) const

References sym_dof_names_.

Referenced by parse_my_tag().

void protocols::matdes::InterfacePackingFilter::sym_dof_names ( std::string const  s)

References sym_dof_names_.

core::Real protocols::matdes::InterfacePackingFilter::upper_threshold ( ) const

References upper_threshold_.

Referenced by parse_my_tag().

void protocols::matdes::InterfacePackingFilter::upper_threshold ( core::Real const  u)

Member Data Documentation

core::Real protocols::matdes::InterfacePackingFilter::contact_dist_
private

Referenced by compute(), and contact_dist().

core::Real protocols::matdes::InterfacePackingFilter::distance_cutoff_
private

Referenced by compute(), and distance_cutoff().

core::Real protocols::matdes::InterfacePackingFilter::lower_threshold_
private

Referenced by apply(), and lower_threshold().

bool protocols::matdes::InterfacePackingFilter::multicomp_
private

Referenced by compute(), and multicomp().

std::string protocols::matdes::InterfacePackingFilter::sym_dof_names_
private

Referenced by compute(), and sym_dof_names().

core::Real protocols::matdes::InterfacePackingFilter::upper_threshold_
private

Referenced by apply(), and upper_threshold().


The documentation for this class was generated from the following files: