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core::scoring::membrane Namespace Reference

Classes

class  FaMPEnvEnergy
 Fullatom Membrane Environment Energy. More...
 
class  FaMPEnvEnergyCreator
 Creator Class for Membrane CBeta Energy Method. More...
 
class  FaMPEnvSmoothEnergy
 Fullatom Membrane Solvation Energy - Statistically Derived, and smoothed derivatives. More...
 
class  FaMPEnvSmoothEnergyCreator
 Membrane Termini Penalty Creator Class. More...
 
class  FaMPSolvEnergy
 Energy Method: Membrane Fullaotm Solvation Energy (LK) More...
 
class  FaMPSolvEnergyCreator
 Creator Class for Membrane CBeta Energy Method. More...
 
class  MembraneData
 Mmebrane Data Class. More...
 
class  MPCbetaEnergy
 Membrane Environemnt CBeta Energy Term. More...
 
class  MPCbetaEnergyCreator
 Creator Class for Membrane CBeta Energy Method. More...
 
class  MPEnvEnergy
 Mmebrane Environemnt Energy Term. More...
 
class  MPEnvEnergyCreator
 Creator Class for Membrane CBeta Energy Method. More...
 
class  MPHelicalityEnergy
 Fullatom Membrane Solvation Energy - Statistically Derived, and smoothed derivatives. More...
 
class  MPHelicalityEnergyCreator
 Membrane Termini Penalty Creator Class. More...
 
class  MPNonHelixPenalty
 Class Membrane Non Helix Penalty. More...
 
class  MPNonHelixPenaltyCreator
 Membrane Non Hleix in mmebrane Penalty Creator Class. More...
 
class  MPPairEnergy
 Membrane Environemtn Residue Pair Energy Term. More...
 
class  MPPairEnergyCreator
 Creator Class for Membrane Residue Pair Energy Method. More...
 
class  MPResidueLipophilicityEnergy
 Fullatom Membrane Solvation Energy - Statistically Derived, and smoothed derivatives. More...
 
class  MPResidueLipophilicityEnergyCreator
 Membrane Termini Penalty Creator Class. More...
 
class  MPSpanAngleEnergy
 
class  MPSpanAngleEnergyCreator
 
class  MPSpanInsertionEnergy
 
class  MPSpanInsertionEnergyCreator
 
class  MPTerminiPenalty
 Class Membrane Termini Penalty. More...
 
class  MPTerminiPenaltyCreator
 Membrane Termini Penalty Creator Class. More...
 
class  MPTMProjPenalty
 Class Membrane TM proj Penalty. More...
 
class  MPTMProjPenaltyCreator
 Membrane TM Proj Penalty Creator Class. More...
 

Typedefs

typedef
utility::pointer::shared_ptr
< FaMPEnvEnergy
FaMPEnvEnergyOP
 
typedef
utility::pointer::shared_ptr
< FaMPEnvEnergy const > 
FaMPEnvEnergyCOP
 
typedef
utility::pointer::shared_ptr
< FaMPEnvSmoothEnergy
FaMPEnvSmoothEnergyOP
 
typedef
utility::pointer::shared_ptr
< FaMPEnvSmoothEnergy const > 
FaMPEnvSmoothEnergyCOP
 
typedef
utility::pointer::shared_ptr
< FaMPSolvEnergy
FaMPSolvEnergyOP
 
typedef
utility::pointer::shared_ptr
< FaMPSolvEnergy const > 
FaMPSolvEnergyCOP
 
typedef
utility::pointer::shared_ptr
< MPCbetaEnergy
MPCbetaEnergyOP
 
typedef
utility::pointer::shared_ptr
< MPCbetaEnergy const > 
MPCbetaEnergyCOP
 
typedef
utility::pointer::shared_ptr
< MPEnvEnergy
MPEnvEnergyOP
 
typedef
utility::pointer::shared_ptr
< MPEnvEnergy const > 
MPEnvEnergyCOP
 
typedef
utility::pointer::shared_ptr
< MPHelicalityEnergy
MPHelicalityEnergyOP
 
typedef
utility::pointer::shared_ptr
< MPHelicalityEnergy const > 
MPHelicalityEnergyCOP
 
typedef
utility::pointer::shared_ptr
< MPPairEnergy
MPPairEnergyOP
 
typedef
utility::pointer::shared_ptr
< MPPairEnergy const > 
MPPairEnergyCOP
 
typedef
utility::pointer::shared_ptr
< MPResidueLipophilicityEnergy
MPResidueLipophilicityEnergyOP
 
typedef
utility::pointer::shared_ptr
< MPResidueLipophilicityEnergy
const > 
MPResidueLipophilicityEnergyCOP
 
typedef
utility::pointer::shared_ptr
< MembraneData
MembraneDataOP
 
typedef
utility::pointer::shared_ptr
< MembraneData const > 
MembraneDataCOP
 
typedef
utility::pointer::shared_ptr
< MPNonHelixPenalty
MPNonHelixPenaltyOP
 
typedef
utility::pointer::shared_ptr
< MPNonHelixPenalty const > 
MPNonHelixPenaltyCOP
 
typedef
utility::pointer::shared_ptr
< MPTerminiPenalty
MPTerminiPenaltyOP
 
typedef
utility::pointer::shared_ptr
< MPTerminiPenalty const > 
MPTerminiPenaltyCOP
 
typedef
utility::pointer::shared_ptr
< MPTMProjPenalty
MPTMProjPenaltyOP
 
typedef
utility::pointer::shared_ptr
< MPTMProjPenalty const > 
MPTMProjPenaltyCOP
 

Functions

Real sqr (Real x)
 

Variables

Distance const start_sig = 9.8
 
Distance const end_sig = 10.2
 
DistanceSquared const start_sig2 = start_sig*start_sig
 
DistanceSquared const end_sig2 = end_sig*end_sig
 
Real const slope_6 = 0.15
 
Real const offset_6 = 20.0
 
Real const slope_12 = 0.5
 
Real const offset_12 = 475.0
 
Real const sixA_slope = 0.15
 
Real const sixA_offset = 20
 
Real const twelveA_slope = 5
 
Real const twelveA_offset = 220.0
 

Typedef Documentation

typedef utility::pointer::shared_ptr< FaMPEnvEnergy const > core::scoring::membrane::FaMPEnvEnergyCOP
typedef utility::pointer::shared_ptr< FaMPEnvEnergy > core::scoring::membrane::FaMPEnvEnergyOP
typedef utility::pointer::shared_ptr< FaMPEnvSmoothEnergy const > core::scoring::membrane::FaMPEnvSmoothEnergyCOP
typedef utility::pointer::shared_ptr< FaMPSolvEnergy const > core::scoring::membrane::FaMPSolvEnergyCOP
typedef utility::pointer::shared_ptr< FaMPSolvEnergy > core::scoring::membrane::FaMPSolvEnergyOP
typedef utility::pointer::shared_ptr< MembraneData const > core::scoring::membrane::MembraneDataCOP
typedef utility::pointer::shared_ptr< MembraneData > core::scoring::membrane::MembraneDataOP
typedef utility::pointer::shared_ptr< MPCbetaEnergy const > core::scoring::membrane::MPCbetaEnergyCOP
typedef utility::pointer::shared_ptr< MPCbetaEnergy > core::scoring::membrane::MPCbetaEnergyOP
typedef utility::pointer::shared_ptr< MPEnvEnergy const > core::scoring::membrane::MPEnvEnergyCOP
typedef utility::pointer::shared_ptr< MPEnvEnergy > core::scoring::membrane::MPEnvEnergyOP
typedef utility::pointer::shared_ptr< MPHelicalityEnergy const > core::scoring::membrane::MPHelicalityEnergyCOP
typedef utility::pointer::shared_ptr< MPHelicalityEnergy > core::scoring::membrane::MPHelicalityEnergyOP
typedef utility::pointer::shared_ptr< MPNonHelixPenalty const > core::scoring::membrane::MPNonHelixPenaltyCOP
typedef utility::pointer::shared_ptr< MPNonHelixPenalty > core::scoring::membrane::MPNonHelixPenaltyOP
typedef utility::pointer::shared_ptr< MPPairEnergy const > core::scoring::membrane::MPPairEnergyCOP
typedef utility::pointer::shared_ptr< MPPairEnergy > core::scoring::membrane::MPPairEnergyOP
typedef utility::pointer::shared_ptr< MPTerminiPenalty const > core::scoring::membrane::MPTerminiPenaltyCOP
typedef utility::pointer::shared_ptr< MPTerminiPenalty > core::scoring::membrane::MPTerminiPenaltyOP
typedef utility::pointer::shared_ptr< MPTMProjPenalty const > core::scoring::membrane::MPTMProjPenaltyCOP
typedef utility::pointer::shared_ptr< MPTMProjPenalty > core::scoring::membrane::MPTMProjPenaltyOP

Function Documentation

Real core::scoring::membrane::sqr ( Real  x)
inline

Variable Documentation

Distance const core::scoring::membrane::end_sig = 10.2
DistanceSquared const core::scoring::membrane::end_sig2 = end_sig*end_sig
Real const core::scoring::membrane::offset_12 = 475.0
Real const core::scoring::membrane::offset_6 = 20.0
Real const core::scoring::membrane::sixA_offset = 20
Real const core::scoring::membrane::sixA_slope = 0.15
Real const core::scoring::membrane::slope_12 = 0.5
Real const core::scoring::membrane::slope_6 = 0.15
Distance const core::scoring::membrane::start_sig = 9.8
DistanceSquared const core::scoring::membrane::start_sig2 = start_sig*start_sig
Real const core::scoring::membrane::twelveA_offset = 220.0
Real const core::scoring::membrane::twelveA_slope = 5