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protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener Class Reference

#include <RNA_ChainClosableGeometryStubBasedScreener.hh>

Inheritance diagram for protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener:
Inheritance graph
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Public Member Functions

 RNA_ChainClosableGeometryStubBasedScreener (modeler::rna::checker::RNA_ChainClosableGeometryCheckerOP chain_closable_geometry_checker, utility::vector1< core::pose::PoseOP > screening_pose_list, core::kinematics::Stub const &moving_res_base_stub, core::Size const reference_res, utility::vector1< core::conformation::ResidueOP > const &moving_rsd_at_origin_list, bool const using_predefined_moving_rsd_list=true)
 
 RNA_ChainClosableGeometryStubBasedScreener (modeler::rna::checker::RNA_ChainClosableGeometryCheckerOP chain_closable_geometry_checker, utility::vector1< core::pose::PoseOP > screening_pose_list, core::kinematics::Stub const &moving_res_base_stub, core::Size const chain_break_reference_res)
 
 ~RNA_ChainClosableGeometryStubBasedScreener () override
 
void get_update (sampler::StepWiseSamplerOP sampler) override
 
bool check_screen () override
 
std::string name () const override
 
StepWiseScreenerType type () const override
 
- Public Member Functions inherited from protocols::stepwise::screener::StepWiseResiduePairScreener
 StepWiseResiduePairScreener (core::Size const res1, core::Size const res2)
 
 ~StepWiseResiduePairScreener () override
 
void fast_forward (sampler::StepWiseSamplerOP sampler) override
 
- Public Member Functions inherited from protocols::stepwise::screener::StepWiseScreener
 StepWiseScreener ()
 
 ~StepWiseScreener () override
 
virtual void apply_mover (moves::CompositionMoverOP, core::Size const, core::Size const )
 
virtual void add_mover (moves::CompositionMoverOP update_mover, moves::CompositionMoverOP restore_mover)
 
core::Size const & count () const
 
void increment_count ()
 
void reset ()
 
void set_ok_to_increment (bool const setting)
 

Private Attributes

modeler::rna::checker::RNA_ChainClosableGeometryCheckerOP chain_closable_geometry_checker_
 
utility::vector1
< core::pose::PoseOP
screening_pose_list_
 
core::conformation::ResidueOP moving_rsd_at_origin_
 
utility::vector1
< core::conformation::ResidueOP
moving_rsd_at_origin_list_
 
core::kinematics::Stub const & moving_res_base_stub_
 
core::Size const reference_res_
 
bool const using_predefined_moving_rsd_list_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::stepwise::screener::StepWiseResiduePairScreener
core::Size const res1_
 
core::Size const res2_
 

Constructor & Destructor Documentation

protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::RNA_ChainClosableGeometryStubBasedScreener ( modeler::rna::checker::RNA_ChainClosableGeometryCheckerOP  chain_closable_geometry_checker,
utility::vector1< core::pose::PoseOP screening_pose_list,
core::kinematics::Stub const &  moving_res_base_stub,
core::Size const  reference_res,
utility::vector1< core::conformation::ResidueOP > const &  moving_rsd_at_origin_list,
bool const  using_predefined_moving_rsd_list = true 
)
protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::RNA_ChainClosableGeometryStubBasedScreener ( modeler::rna::checker::RNA_ChainClosableGeometryCheckerOP  chain_closable_geometry_checker,
utility::vector1< core::pose::PoseOP screening_pose_list,
core::kinematics::Stub const &  moving_res_base_stub,
core::Size const  chain_break_reference_res 
)
protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::~RNA_ChainClosableGeometryStubBasedScreener ( )
overridedefault

Member Function Documentation

bool protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::check_screen ( )
overridevirtual
void protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::get_update ( sampler::StepWiseSamplerOP  sampler)
overridevirtual
std::string protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::name ( ) const
inlineoverridevirtual
StepWiseScreenerType protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::type ( ) const
inlineoverridevirtual

Member Data Documentation

modeler::rna::checker::RNA_ChainClosableGeometryCheckerOP protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::chain_closable_geometry_checker_
private

Referenced by check_screen().

core::kinematics::Stub const& protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::moving_res_base_stub_
private

Referenced by check_screen().

core::conformation::ResidueOP protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::moving_rsd_at_origin_
private

Referenced by check_screen(), and get_update().

utility::vector1< core::conformation::ResidueOP > protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::moving_rsd_at_origin_list_
private

Referenced by check_screen().

core::Size const protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::reference_res_
private

Referenced by check_screen().

utility::vector1< core::pose::PoseOP > protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::screening_pose_list_
private

Referenced by check_screen().

bool const protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener::using_predefined_moving_rsd_list_
private

Referenced by check_screen().


The documentation for this class was generated from the following files: