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protocols::grafting::AnchoredGraftMover Member List

This is the complete list of members for protocols::grafting::AnchoredGraftMover, including all inherited members.

AnchoredGraftMover()protocols::grafting::AnchoredGraftMover
AnchoredGraftMover(core::Size const start, core::Size const end, bool copy_pdbinfo=false)protocols::grafting::AnchoredGraftMover
AnchoredGraftMover(core::Size const start, core::Size const end, core::pose::Pose const &piece, core::Size Nter_overhang_length=0, core::Size Cter_overhang_length=0, bool copy_pdbinfo=false)protocols::grafting::AnchoredGraftMover
apply(core::pose::Pose &pose) overrideprotocols::grafting::AnchoredGraftMovervirtual
cen_scorefxn() constprotocols::grafting::AnchoredGraftMoverprotected
cen_scorefxn_protocols::grafting::AnchoredGraftMoverprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::grafting::AnchoredGraftMovervirtual
complex_type_generator_for_anchored_graft_mover(utility::tag::XMLSchemaDefinition &)protocols::grafting::AnchoredGraftMoverstatic
copy_pdbinfo(bool copy_pdbinfo)protocols::grafting::GraftMoverBase
copy_pdbinfo() constprotocols::grafting::GraftMoverBaseinline
copy_pdbinfo_protocols::grafting::GraftMoverBaseprivate
create()protocols::moves::Movervirtual
Cter_insert_flexibility() constprotocols::grafting::AnchoredGraftMoverprotected
Cter_insert_flexibility_protocols::grafting::AnchoredGraftMoverprivate
Cter_loop_end() constprotocols::grafting::AnchoredGraftMoverprotected
Cter_loop_end_protocols::grafting::AnchoredGraftMoverprivate
Cter_loop_start() constprotocols::grafting::AnchoredGraftMoverprotected
Cter_loop_start_protocols::grafting::AnchoredGraftMoverprivate
Cter_overhang_length()protocols::grafting::GraftMoverBaseprotected
Cter_overhang_length(core::Size overhang)protocols::grafting::GraftMoverBaseprotected
Cter_overhang_length_protocols::grafting::GraftMoverBaseprivate
Cter_scaffold_flexibility() constprotocols::grafting::AnchoredGraftMoverprotected
Cter_scaffold_flexibility_protocols::grafting::AnchoredGraftMoverprivate
current_job_protocols::moves::Moverprivate
current_tag_protocols::moves::Moverprivate
cycles() constprotocols::grafting::AnchoredGraftMoverprotected
cycles_protocols::grafting::AnchoredGraftMoverprivate
end()protocols::grafting::GraftMoverBase
end(core::Size end)protocols::grafting::GraftMoverBaseprotected
end_protocols::grafting::GraftMoverBaseprivate
fa_scorefxn() constprotocols::grafting::AnchoredGraftMoverprotected
fa_scorefxn_protocols::grafting::AnchoredGraftMoverprivate
final_repack(bool final_repack)protocols::grafting::AnchoredGraftMover
final_repack()protocols::grafting::AnchoredGraftMover
final_repack_protocols::grafting::AnchoredGraftMoverprivate
fresh_instance() const overrideprotocols::grafting::AnchoredGraftMovervirtual
get_additional_output()protocols::moves::Movervirtual
get_Cter_loop_end()protocols::grafting::AnchoredGraftMover
get_cterm_insert_flexibility()protocols::grafting::AnchoredGraftMover
get_cterm_scaffold_flexibility()protocols::grafting::AnchoredGraftMover
get_current_job() constprotocols::moves::Mover
get_current_tag() constprotocols::moves::Moverinline
get_input_pose() constprotocols::moves::Mover
get_last_move_status() constprotocols::moves::Mover
get_loops()protocols::grafting::AnchoredGraftMoverinline
get_name() const overrideprotocols::grafting::AnchoredGraftMovervirtual
get_native_pose() constprotocols::moves::Mover
get_nterm_insert_flexibility()protocols::grafting::AnchoredGraftMover
get_nterm_scaffold_flexibility()protocols::grafting::AnchoredGraftMover
get_self_ptr() constprotocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() constprotocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() constprotocols::moves::Moverinline
graft_is_closed() constprotocols::grafting::AnchoredGraftMoverinline
graft_is_closed_protocols::grafting::AnchoredGraftMoverprivate
GraftMoverBase(std::string mover_name)protocols::grafting::GraftMoverBase
GraftMoverBase(core::Size const start, core::Size const end, std::string mover_name)protocols::grafting::GraftMoverBase
GraftMoverBase(core::Size const start, core::Size const end, std::string mover_name, core::pose::Pose const &piece, core::Size Nter_overhang_length=0, core::Size Cter_overhang_length=0)protocols::grafting::GraftMoverBase
idealize_insert(bool idealize)protocols::grafting::AnchoredGraftMover
idealize_insert() constprotocols::grafting::AnchoredGraftMoverinline
idealize_insert_protocols::grafting::AnchoredGraftMoverprivate
info()protocols::moves::Moverinlinevirtual
info() constprotocols::moves::Moverinlinevirtual
info_protocols::moves::Moverprivate
input_pose_protocols::moves::Moverprivate
insert_movemap_protocols::grafting::AnchoredGraftMoverprivate
insert_movemap_factory_protocols::grafting::AnchoredGraftMoverprivate
insert_piece(core::pose::Pose const &pose, core::pose::Pose &piece)protocols::grafting::GraftMoverBaseprotected
insertion_length()protocols::grafting::GraftMoverBase
insertion_length(core::Size insertion_length)protocols::grafting::GraftMoverBaseprotected
insertion_length_protocols::grafting::GraftMoverBaseprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
last_status_protocols::moves::Moverprivate
loops_protocols::grafting::AnchoredGraftMoverprivate
mintype() constprotocols::grafting::AnchoredGraftMoverprotected
mintype_protocols::grafting::AnchoredGraftMoverprivate
movemap(core::kinematics::MoveMapOP movemap)protocols::grafting::AnchoredGraftMoverprotected
movemap() constprotocols::grafting::AnchoredGraftMoverprotected
movemap_protocols::grafting::AnchoredGraftMoverprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
mover_name()protocols::grafting::AnchoredGraftMoverstatic
name()protocols::moves::Moverinlinestatic
native_pose_protocols::moves::Moverprivate
neighbor_dis(core::Real dis)protocols::grafting::AnchoredGraftMover
neighbor_dis() constprotocols::grafting::AnchoredGraftMover
neighbor_dis_protocols::grafting::AnchoredGraftMoverprivate
Nter_insert_flexibility() constprotocols::grafting::AnchoredGraftMoverprotected
Nter_insert_flexibility_protocols::grafting::AnchoredGraftMoverprivate
Nter_loop_end() constprotocols::grafting::AnchoredGraftMoverprotected
Nter_loop_end_protocols::grafting::AnchoredGraftMoverprivate
Nter_loop_start() constprotocols::grafting::AnchoredGraftMoverprotected
Nter_loop_start_protocols::grafting::AnchoredGraftMoverprivate
Nter_overhang_length()protocols::grafting::GraftMoverBaseprotected
Nter_overhang_length(core::Size overhang)protocols::grafting::GraftMoverBaseprotected
Nter_overhang_length_protocols::grafting::GraftMoverBaseprivate
Nter_scaffold_flexibility() constprotocols::grafting::AnchoredGraftMoverprotected
Nter_scaffold_flexibility_protocols::grafting::AnchoredGraftMoverprivate
original_end()protocols::grafting::GraftMoverBase
original_end(core::Size original_end)protocols::grafting::GraftMoverBaseprotected
original_end_protocols::grafting::GraftMoverBaseprivate
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) overrideprotocols::grafting::AnchoredGraftMovervirtual
piece()protocols::grafting::GraftMoverBaseprotected
piece(core::pose::PoseCOP piece)protocols::grafting::GraftMoverBaseprotected
piece_protocols::grafting::GraftMoverBaseprivate
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const overrideprotocols::grafting::AnchoredGraftMovervirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::grafting::AnchoredGraftMoverstatic
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() constprotocols::moves::Movervirtual
reinitialize_for_new_input() constprotocols::moves::Movervirtual
reset_status()protocols::moves::Mover
scaffold_end() constprotocols::grafting::AnchoredGraftMoverprotected
scaffold_end_protocols::grafting::AnchoredGraftMoverprivate
scaffold_movemap_protocols::grafting::AnchoredGraftMoverprivate
scaffold_movemap_factory_protocols::grafting::AnchoredGraftMoverprivate
scaffold_start() constprotocols::grafting::AnchoredGraftMoverprotected
scaffold_start_protocols::grafting::AnchoredGraftMoverprivate
set_cen_scorefunction(core::scoring::ScoreFunctionCOP score)protocols::grafting::AnchoredGraftMovervirtual
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_cycles(core::Size cycles)protocols::grafting::AnchoredGraftMover
set_default_cen_scorefunction()protocols::grafting::AnchoredGraftMoverprotectedvirtual
set_default_fa_scorefunction()protocols::grafting::AnchoredGraftMoverprotectedvirtual
set_default_movemap()protocols::grafting::AnchoredGraftMoverprotectedvirtual
set_defaults()protocols::grafting::AnchoredGraftMover
set_fa_scorefunction(core::scoring::ScoreFunctionCOP score)protocols::grafting::AnchoredGraftMovervirtual
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_insert_flexibility(core::Size const Nter_insert_flexibility, core::Size const Cter_insert_flexibility)protocols::grafting::AnchoredGraftMover
set_insert_region(core::Size const start, core::Size const end)protocols::grafting::GraftMoverBasevirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_loops(protocols::loops::LoopsOP loops)protocols::grafting::AnchoredGraftMoverprotected
set_mintype(std::string mintype)protocols::grafting::AnchoredGraftMover
set_movemaps(core::kinematics::MoveMapCOP const scaffold_mm, core::kinematics::MoveMapCOP const insert_mm)protocols::grafting::AnchoredGraftMovervirtual
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_piece(core::pose::Pose const &piece, core::Size Nter_overhang_length, core::Size Cter_overhang_length)protocols::grafting::GraftMoverBase
set_regions_from_flexibility()protocols::grafting::AnchoredGraftMoverprotectedvirtual
set_regions_from_movemap(core::pose::Pose &pose)protocols::grafting::AnchoredGraftMoverprotectedvirtual
set_scaffold_flexibility(core::Size const Nter_scaffold_flexibility, core::Size const Cter_scaffold_flexibility)protocols::grafting::AnchoredGraftMover
set_skip_sampling(bool skip_sampling)protocols::grafting::AnchoredGraftMover
set_test_control_mode(bool test_control_mode)protocols::grafting::AnchoredGraftMoverprotected
set_type(std::string const &setting)protocols::moves::Moverinline
setup_default_min_mover() constprotocols::grafting::AnchoredGraftMoverprotectedvirtual
setup_default_small_mover() constprotocols::grafting::AnchoredGraftMoverprotectedvirtual
setup_movemap_and_regions(core::pose::Pose &pose)protocols::grafting::AnchoredGraftMoverprotectedvirtual
setup_scorefunction()protocols::grafting::AnchoredGraftMoverprotected
show(std::ostream &output=std::cout) constprotocols::moves::Movervirtual
skip_sampling() constprotocols::grafting::AnchoredGraftMoverprotected
skip_sampling_protocols::grafting::AnchoredGraftMoverprivate
start()protocols::grafting::GraftMoverBase
start(core::Size start)protocols::grafting::GraftMoverBaseprotected
start_protocols::grafting::GraftMoverBaseprivate
stop_at_closure(bool stop_at_closure)protocols::grafting::AnchoredGraftMover
stop_at_closure()protocols::grafting::AnchoredGraftMover
stop_at_closure_protocols::grafting::AnchoredGraftMoverprivate
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
test_control_mode() constprotocols::grafting::AnchoredGraftMoverprotected
test_control_mode_protocols::grafting::AnchoredGraftMoverprivate
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type(const std::string &type_in)protocols::moves::Moverinline
type() constprotocols::moves::Moverinline
type_protocols::moves::Moverprivate
use_default_movemap(bool use_default_movemap)protocols::grafting::AnchoredGraftMoverprotected
use_default_movemap() constprotocols::grafting::AnchoredGraftMoverprotected
use_default_movemap_protocols::grafting::AnchoredGraftMoverprivate