Rosetta
protocols::ncbb::NcbbDockDesignProtocol Member List

This is the complete list of members for protocols::ncbb::NcbbDockDesignProtocol, including all inherited members.

apply(core::pose::Pose &pose) overrideprotocols::ncbb::NcbbDockDesignProtocolvirtual
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::ncbb::NcbbDockDesignProtocolvirtual
create()protocols::moves::Movervirtual
current_job_protocols::moves::Moverprivate
current_tag_protocols::moves::Moverprivate
dock_design_loop_num_protocols::ncbb::NcbbDockDesignProtocolprivate
final_design_min_protocols::ncbb::NcbbDockDesignProtocolprivate
fresh_instance() const overrideprotocols::ncbb::NcbbDockDesignProtocolinlinevirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() constprotocols::moves::Mover
get_current_tag() constprotocols::moves::Moverinline
get_input_pose() constprotocols::moves::Mover
get_last_move_status() constprotocols::moves::Mover
get_name() const overrideprotocols::ncbb::NcbbDockDesignProtocolvirtual
get_native_pose() constprotocols::moves::Mover
get_self_ptr() constprotocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() constprotocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() constprotocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() constprotocols::moves::Moverinlinevirtual
info_protocols::moves::Moverprivate
input_pose_protocols::moves::Moverprivate
keep_history_protocols::ncbb::NcbbDockDesignProtocolprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
last_status_protocols::moves::Moverprivate
mc_initial_pose_protocols::ncbb::NcbbDockDesignProtocolprivate
mc_temp_protocols::ncbb::NcbbDockDesignProtocolprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
mover_name()protocols::ncbb::NcbbDockDesignProtocolstatic
name()protocols::moves::Moverinlinestatic
native_pose_protocols::moves::Moverprivate
ncbb_design_first_protocols::ncbb::NcbbDockDesignProtocolprivate
NcbbDockDesignProtocol()protocols::ncbb::NcbbDockDesignProtocol
NcbbDockDesignProtocol(core::scoring::ScoreFunctionOP score_function, core::Real const mc_temp, core::Real const pert_mc_temp, core::Real const pert_dock_rot_mag, core::Real const pert_dock_trans_mag, core::Real const pert_pep_small_temp, core::Real const pert_pep_small_H, core::Real const pert_pep_small_L, core::Real const pert_pep_small_E, core::Real const pert_pep_shear_temp, core::Real const pert_pep_shear_H, core::Real const pert_pep_shear_L, core::Real const pert_pep_shear_E, core::Size const pert_pep_num_rep, core::Size const pert_num, core::Size const dock_design_loop_num, bool const no_design, bool const final_design_min, bool const use_soft_rep, bool const mc_initial_pose, bool const ncbb_design_first, bool const pymol, bool const keep_history)protocols::ncbb::NcbbDockDesignProtocol
NcbbDockDesignProtocol(core::scoring::ScoreFunctionOP score_function, core::Real const mc_temp, core::Real const pert_dock_rot_mag, core::Real const pert_dock_trans_mag, core::Size const dock_design_loop_num, bool const no_design, bool const final_design_min, bool const pymol, bool const keep_history)protocols::ncbb::NcbbDockDesignProtocol
no_design_protocols::ncbb::NcbbDockDesignProtocolprivate
parse_my_tag(utility::tag::TagCOP, basic::datacache::DataMap &) overrideprotocols::ncbb::NcbbDockDesignProtocolvirtual
pert_dock_rot_mag_protocols::ncbb::NcbbDockDesignProtocolprivate
pert_dock_trans_mag_protocols::ncbb::NcbbDockDesignProtocolprivate
pert_mc_temp_protocols::ncbb::NcbbDockDesignProtocolprivate
pert_num_protocols::ncbb::NcbbDockDesignProtocolprivate
pert_pep_num_rep_protocols::ncbb::NcbbDockDesignProtocolprivate
pert_pep_shear_E_protocols::ncbb::NcbbDockDesignProtocolprivate
pert_pep_shear_H_protocols::ncbb::NcbbDockDesignProtocolprivate
pert_pep_shear_L_protocols::ncbb::NcbbDockDesignProtocolprivate
pert_pep_shear_temp_protocols::ncbb::NcbbDockDesignProtocolprivate
pert_pep_small_E_protocols::ncbb::NcbbDockDesignProtocolprivate
pert_pep_small_H_protocols::ncbb::NcbbDockDesignProtocolprivate
pert_pep_small_L_protocols::ncbb::NcbbDockDesignProtocolprivate
pert_pep_small_temp_protocols::ncbb::NcbbDockDesignProtocolprivate
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) constprotocols::moves::Movervirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::ncbb::NcbbDockDesignProtocolstatic
pymol_protocols::ncbb::NcbbDockDesignProtocolprivate
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() constprotocols::moves::Movervirtual
reinitialize_for_new_input() constprotocols::moves::Movervirtual
reset_status()protocols::moves::Mover
score_fxn_protocols::ncbb::NcbbDockDesignProtocolprivate
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_type(std::string const &setting)protocols::moves::Moverinline
show(std::ostream &output=std::cout) constprotocols::moves::Movervirtual
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type(const std::string &type_in)protocols::moves::Moverinline
type() constprotocols::moves::Moverinline
type_protocols::moves::Moverprivate
use_soft_rep_protocols::ncbb::NcbbDockDesignProtocolprivate
~NcbbDockDesignProtocol() override=defaultprotocols::ncbb::NcbbDockDesignProtocol