protocols::simple_ddg::InterfaceBindingEnergyDensityFilter Class Reference

#include <InterfaceBindingEnergyDensityFilter.hh>

Inheritance diagram for protocols::simple_ddg::InterfaceBindingEnergyDensityFilter:

Public Member Functions
	InterfaceBindingEnergyDensityFilter ()
	InterfaceBindingEnergyDensityFilter (protocols::simple_filters::InterfaceSasaFilterOP sasa_filter, DdgFilterOP ddG_filter, core::Real threshold)
	~InterfaceBindingEnergyDensityFilter () override
void	set_interface_sasa_filter (protocols::simple_filters::InterfaceSasaFilterOP sasa_filter)
void	set_ddG_filter (DdgFilterOP ddG_filter)
void	set_upper_threshold (core::Real threshold)
bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...
void	report (std::ostream &out, core::pose::Pose const &pose) const override
core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...
core::Real	compute (core::pose::Pose const &pose) const
filters::FilterOP	clone () const override
filters::FilterOP	fresh_instance () const override
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
std::string	name () const override
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	~Filter () override
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
protocols::simple_filters::InterfaceSasaFilterOP	sasa_filter_
DdgFilterOP	ddG_filter_
core::Real	upper_threshold_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

InterfaceBindingEnergyDensityFilter() [1/2]

protocols::simple_ddg::InterfaceBindingEnergyDensityFilter::InterfaceBindingEnergyDensityFilter

(

)

InterfaceBindingEnergyDensityFilter() [2/2]

protocols::simple_ddg::InterfaceBindingEnergyDensityFilter::InterfaceBindingEnergyDensityFilter	(	protocols::simple_filters::InterfaceSasaFilterOP	sasa_filter,
		DdgFilterOP	ddG_filter,
		core::Real	threshold
	)

~InterfaceBindingEnergyDensityFilter()

protocols::simple_ddg::InterfaceBindingEnergyDensityFilter::~InterfaceBindingEnergyDensityFilter ( )

overridedefault

Member Function Documentation

apply()

bool protocols::simple_ddg::InterfaceBindingEnergyDensityFilter::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References ddG_filter_, sasa_filter_, protocols::simple_ddg::TR(), and upper_threshold_.

class_name()

std::string protocols::simple_ddg::InterfaceBindingEnergyDensityFilter::class_name ( )

static

Referenced by protocols::simple_ddg::InterfaceBindingEnergyDensityFilterCreator::keyname(), name(), and provide_xml_schema().

clone()

filters::FilterOP protocols::simple_ddg::InterfaceBindingEnergyDensityFilter::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

compute()

core::Real protocols::simple_ddg::InterfaceBindingEnergyDensityFilter::compute

(

core::pose::Pose const &

pose

)

const

References ddG_filter_, and sasa_filter_.

fresh_instance()

filters::FilterOP protocols::simple_ddg::InterfaceBindingEnergyDensityFilter::fresh_instance ( ) const

overridevirtual

Implements protocols::filters::Filter.

name()

std::string protocols::simple_ddg::InterfaceBindingEnergyDensityFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

parse_my_tag()

void protocols::simple_ddg::InterfaceBindingEnergyDensityFilter::parse_my_tag ( utility::tag::TagCOP  , basic::datacache::DataMap &    )

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References ddG_filter_, protocols::rosetta_scripts::parse_filter_or_null(), sasa_filter_, and upper_threshold_.

provide_xml_schema()

void protocols::simple_ddg::InterfaceBindingEnergyDensityFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::simple_ddg::InterfaceBindingEnergyDensityFilterCreator::provide_xml_schema().

report()

void protocols::simple_ddg::InterfaceBindingEnergyDensityFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References ddG_filter_, core::conformation::membrane::out, and sasa_filter_.

report_sm()

core::Real protocols::simple_ddg::InterfaceBindingEnergyDensityFilter::report_sm ( core::pose::Pose const &  ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References ddG_filter_, and sasa_filter_.

set_ddG_filter()

void protocols::simple_ddg::InterfaceBindingEnergyDensityFilter::set_ddG_filter

(

DdgFilterOP

ddG_filter

)

References ddG_filter_.

set_interface_sasa_filter()

void protocols::simple_ddg::InterfaceBindingEnergyDensityFilter::set_interface_sasa_filter

(

protocols::simple_filters::InterfaceSasaFilterOP

sasa_filter

)

References sasa_filter_.

set_upper_threshold()

void protocols::simple_ddg::InterfaceBindingEnergyDensityFilter::set_upper_threshold

(

core::Real

threshold

)

References upper_threshold_.

Member Data Documentation

ddG_filter_

DdgFilterOP protocols::simple_ddg::InterfaceBindingEnergyDensityFilter::ddG_filter_

private

Referenced by apply(), compute(), parse_my_tag(), report(), report_sm(), and set_ddG_filter().

sasa_filter_

protocols::simple_filters::InterfaceSasaFilterOP protocols::simple_ddg::InterfaceBindingEnergyDensityFilter::sasa_filter_

private

Referenced by apply(), compute(), parse_my_tag(), report(), report_sm(), and set_interface_sasa_filter().

upper_threshold_

core::Real protocols::simple_ddg::InterfaceBindingEnergyDensityFilter::upper_threshold_

private

Referenced by apply(), parse_my_tag(), and set_upper_threshold().

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The documentation for this class was generated from the following files:

• src/protocols/simple_ddg/InterfaceBindingEnergyDensityFilter.hh
• src/protocols/simple_ddg/InterfaceBindingEnergyDensityFilter.cc