Public Member Functions | Private Member Functions | Private Attributes | List of all members
protocols::simple_moves::CopyDofMover Class Reference

#include <CopyDofMover.hh>

Inheritance diagram for protocols::simple_moves::CopyDofMover:
Inheritance graph

Public Member Functions

 CopyDofMover (core::pose::Pose const &template_pose, std::map< core::Size, core::Size > const &res_map)
 ~CopyDofMover () override
void apply (core::pose::Pose &pose) override
 Main Method. More...
std::string get_name () const override
 Each derived class must specify its name. The class name. More...
core::pose::copydofs::CopyDofsInfo const & copy_dofs_info (core::pose::Pose const &pose) const
void set_copy_dofs_info (core::pose::Pose const &pose, core::pose::copydofs::CopyDofsInfo const &copy_dofs_info)
- Public Member Functions inherited from protocols::moves::Mover
 Mover ()
virtual MoverOP create ()
MoverCOP get_self_ptr () const
MoverOP get_self_ptr ()
MoverCAP get_self_weak_ptr () const
MoverAP get_self_weak_ptr ()
 Mover (std::string const &type_name)
 sets the type for a mover; name_ has been removed (2010/05/14) More...
virtual void test_move (Pose &pose)
 : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More...
virtual MoverOP clone () const
 Return a clone of the Mover object. More...
virtual bool reinitialize_for_each_job () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More...
virtual bool reinitialize_for_new_input () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More...
virtual MoverOP fresh_instance () const
 Generates a new Mover object freshly created with the default ctor. More...
MoverStatus get_last_move_status () const
 end parser interface, start Job Distributor interface///////////// More...
void reset_status ()
 resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More...
virtual core::pose::PoseOP get_additional_output ()
 Mechanism by which a mover may return multiple output poses from a single input pose. More...
void set_type (std::string const &setting)
 Set the 'type' string. More...
std::string get_type () const
void type (const std::string &type_in)
 Set the 'type' string. More...
std::string const & type () const
 Get the set 'type' string. More...
virtual void set_input_pose (PoseCOP pose)
 setter for poses contained for rms More...
virtual void set_native_pose (PoseCOP pose)
 setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More...
PoseCOP get_input_pose () const
PoseCOP get_native_pose () const
virtual void parse_my_tag (TagCOP tag, basic::datacache::DataMap &data)
 Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing. More...
void set_current_job (protocols::jobdist::BasicJobCOP job)
jobdist::BasicJobCOP get_current_job () const
virtual void set_current_tag (std::string const &new_tag)
std::string get_current_tag () const
 A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More...
virtual void show (std::ostream &output=std::cout) const
 Outputs details about the Mover, including current settings. More...
virtual core::Real last_proposal_density_ratio ()
virtual void clear_info ()
 Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More...
virtual Stringsinfo ()
 non-const accessor More...
virtual Strings const & info () const
 const accessor More...
virtual void provide_citation_info (basic::citation_manager::CitationCollectionList &) const
 Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Private Member Functions

std::string pose_string (core::pose::Pose const &pose, utility::vector1< core::Size > const &res_list) const
std::string pose_string (core::pose::Pose const &pose) const
bool check_for_precomputed_copy_dofs_info (core::pose::Pose const &pose) const

Private Attributes

core::pose::Pose const & template_pose_
core::pose::MiniPose const template_mini_pose_
std::map< core::Size, core::Sizeres_map_
bool backbone_only_
bool side_chain_only_
bool ignore_virtual_
bool use_hash_
std::string pose_string_
std::map< std::string, core::pose::copydofs::CopyDofsInfocopy_dofs_info_

Additional Inherited Members

- Public Types inherited from protocols::moves::Mover
typedef utility::tag::TagCOP TagCOP
typedef core::pose::Pose Pose
typedef core::pose::PoseCOP PoseCOP
typedef std::list< std::string > Strings
- Static Public Member Functions inherited from protocols::moves::Mover
static std::string name ()
static void register_options ()
 Overload this static method if you access options within the mover. More...
- Protected Member Functions inherited from protocols::moves::Mover
void set_last_move_status (MoverStatus status)
 nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More...

Constructor & Destructor Documentation

◆ CopyDofMover()

protocols::simple_moves::CopyDofMover::CopyDofMover ( core::pose::Pose const &  template_pose,
std::map< core::Size, core::Size > const &  res_map 

◆ ~CopyDofMover()

protocols::simple_moves::CopyDofMover::~CopyDofMover ( )

Member Function Documentation

◆ apply()

void protocols::simple_moves::CopyDofMover::apply ( core::pose::Pose )

◆ check_for_precomputed_copy_dofs_info()

bool protocols::simple_moves::CopyDofMover::check_for_precomputed_copy_dofs_info ( core::pose::Pose const &  pose) const

References copy_dofs_info_, and pose_string().

Referenced by apply(), and copy_dofs_info().

◆ copy_dofs_info()

pose::copydofs::CopyDofsInfo const & protocols::simple_moves::CopyDofMover::copy_dofs_info ( core::pose::Pose const &  pose) const

◆ get_name()

std::string protocols::simple_moves::CopyDofMover::get_name ( ) const

Each derived class must specify its name. The class name.

Implements protocols::moves::Mover.

◆ pose_string() [1/2]

std::string protocols::simple_moves::CopyDofMover::pose_string ( core::pose::Pose const &  pose) const

References pose_string(), and res_map_.

◆ pose_string() [2/2]

std::string protocols::simple_moves::CopyDofMover::pose_string ( core::pose::Pose const &  pose,
utility::vector1< core::Size > const &  res_list 
) const

◆ set_copy_dofs_info()

void protocols::simple_moves::CopyDofMover::set_copy_dofs_info ( core::pose::Pose const &  pose,
core::pose::copydofs::CopyDofsInfo const &  copy_dofs_info 

Member Data Documentation

◆ backbone_only_

bool protocols::simple_moves::CopyDofMover::backbone_only_

Referenced by apply().

◆ copy_dofs_info_

std::map< std::string, core::pose::copydofs::CopyDofsInfo > protocols::simple_moves::CopyDofMover::copy_dofs_info_

◆ ignore_virtual_

bool protocols::simple_moves::CopyDofMover::ignore_virtual_

Referenced by apply().

◆ pose_string_

std::string protocols::simple_moves::CopyDofMover::pose_string_

Referenced by apply().

◆ res_map_

std::map< core::Size, core::Size > protocols::simple_moves::CopyDofMover::res_map_

Referenced by apply(), and pose_string().

◆ side_chain_only_

bool protocols::simple_moves::CopyDofMover::side_chain_only_

Referenced by apply().

◆ template_mini_pose_

core::pose::MiniPose const protocols::simple_moves::CopyDofMover::template_mini_pose_

Referenced by apply().

◆ template_pose_

core::pose::Pose const& protocols::simple_moves::CopyDofMover::template_pose_

Referenced by apply().

◆ use_hash_

bool protocols::simple_moves::CopyDofMover::use_hash_

Referenced by apply().

The documentation for this class was generated from the following files: