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protocols::frag_picker::DiversifyCrmsdByClustering Class Reference

selects fragments by running several selectors More...

#include <DiversifyCrmsdByClustering.hh>

Inheritance diagram for protocols::frag_picker::DiversifyCrmsdByClustering:
Inheritance graph
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Public Member Functions

 DiversifyCrmsdByClustering (core::Size frags_per_pos)
 Constructor sets the desired number of fragments and crmsd cutoff. More...
 
void select_fragments (ScoredCandidatesVector1 const &, ScoredCandidatesVector1 &) override
 Selects desired number of fragments from a given set of candidates. More...
 
 ~DiversifyCrmsdByClustering () override=default
 
- Public Member Functions inherited from protocols::frag_picker::FragmentSelectingRule
 FragmentSelectingRule (core::Size frags_per_pos)
 Constructor sets the desired number of fragments. More...
 
core::Size frags_per_pos ()
 Says how many fragments will be selected for each position in a query sequence. More...
 
 ~FragmentSelectingRule () override=default
 

Private Member Functions

void copy_coordinates (FragmentCandidateOP src, ObjexxFCL::FArray2D_double &dst)
 

Private Attributes

utility::vector1
< ObjexxFCL::FArray2D_double > 
xyz_
 
ObjexxFCL::FArray1D_double weights_
 

Detailed Description

selects fragments by running several selectors

Constructor & Destructor Documentation

protocols::frag_picker::DiversifyCrmsdByClustering::DiversifyCrmsdByClustering ( core::Size  frags_per_pos)
inline

Constructor sets the desired number of fragments and crmsd cutoff.

protocols::frag_picker::DiversifyCrmsdByClustering::~DiversifyCrmsdByClustering ( )
overridedefault

Member Function Documentation

void protocols::frag_picker::DiversifyCrmsdByClustering::copy_coordinates ( FragmentCandidateOP  src,
ObjexxFCL::FArray2D_double &  dst 
)
private
void protocols::frag_picker::DiversifyCrmsdByClustering::select_fragments ( ScoredCandidatesVector1 const &  in,
ScoredCandidatesVector1 out 
)
overridevirtual

Selects desired number of fragments from a given set of candidates.

Implements protocols::frag_picker::FragmentSelectingRule.

References protocols::frag_picker::trDiversifyCrmsdByClustering(), and protocols::hybridization::val.

Member Data Documentation

ObjexxFCL::FArray1D_double protocols::frag_picker::DiversifyCrmsdByClustering::weights_
private
utility::vector1<ObjexxFCL::FArray2D_double> protocols::frag_picker::DiversifyCrmsdByClustering::xyz_
private

The documentation for this class was generated from the following files: