Rosetta  2020.37
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Classes | Functions | Variables
core::init Namespace Reference

Classes

struct  pre_talaris_2013_behavior_settings
 

Functions

static basic::Tracer TR ("core.init")
 
void init_mpi (int, char **)
 
void init_options (int argc, char *argv[])
 Initialize the option system, which manages command line options. More...
 
void init_crash_reporter (int argc, char *argv[])
 Setup crash reporter. More...
 
void init_complex_options ()
 After the tracers have been initialized, now go back and modify some of the values in the options system based on (hard coded) inter-flag relationships. Some of these relationships are set in the basic::options::process() function, some of them are handled in this .cc file. More...
 
void init_tracers ()
 Tracers control output to std::cout and std::cerr. More...
 
void init_source_revision ()
 Choose to output source version control information? More...
 
void init_paths ()
 Setup basic search paths. More...
 
void check_deprecated_flags ()
 Check for deprecated flags specified by the user and output error messages if necessary. More...
 
void report_application_command (int argc, char *argv[])
 Describe the application execution command. More...
 
void random_delay ()
 Choose to randomly delay execution to desyncronize parallel execution. More...
 
void locate_rosetta_database ()
 Locate rosetta_database. More...
 
void check_load_fconfig ()
 Check if common config file exists and load it/them as flags files. More...
 
void init_profiling ()
 Profiling measures execution performance. More...
 
void init_resources ()
 Set up system resources. More...
 
void init (int argc, char *argv[])
 Init basic core systems: options system, random system. More...
 
void init (utility::vector1< std::string > const &args)
 wrapper for core system Init More...
 
void init_mpi (int argc, char *argv[])
 Initialize MPI (message passing interface) for parallel applications. More...
 
static basic::Tracer TR ("core.init.score_function_corrections")
 
void init_score_function_corrections (utility::options::OptionCollection &options)
 Initialize the latest and greatest score function parameters. More...
 
void init_revert_to_pre_talaris_2013_mistake (utility::options::OptionCollection &options)
 Initialize the "revert to before Talaris2013" mistake. More...
 
void revert_to_pre_talaris_2013_defaults (utility::options::OptionCollection &options)
 Reset a set of flags to their pre-talaris behavior. More...
 
void init_pre_beta_nov15_etable (utility::options::OptionCollection &options)
 Initialize the -pre_beta_nov15 etable. More...
 
void init_revert_to_talaris (utility::options::OptionCollection &options)
 Initialize the revert-to-Talaris2014. More...
 
void init_hbond_sp2_correction (utility::options::OptionCollection &options)
 Initialize the hbond Sp2 correction Deprecated as Talaris2013 becomes default. More...
 
void init_facts_correction (utility::options::OptionCollection &options)
 Initialize the FACTS correction. More...
 
void init_correct_correction (utility::options::OptionCollection &options)
 Initialize the -correct correction. More...
 
void init_shapovalov_lib_fixes_enable_correction (utility::options::OptionCollection &options)
 Initialize the -shapovalov_lib_fixes_enable correction. More...
 
void init_crystal_refinement_correction (utility::options::OptionCollection &options)
 Initialize the crystal refinement correction. More...
 
void init_beta_correction (utility::options::OptionCollection &options)
 Initialize the most recent beta score function (-beta) More...
 
void init_beta_july15_correction (utility::options::OptionCollection &options)
 Initialize the -beta_july15 score function. More...
 
void init_beta_nov16_correction (utility::options::OptionCollection &options, bool setweight=true)
 Initialize the -beta_nov16 score function. More...
 
void init_nonideal_correction (utility::options::OptionCollection &options)
 Initialize nonideal bond geometry correction. More...
 
void init_restore_score12prime (utility::options::OptionCollection &options)
 restore the the score function to the Score12prime version More...
 
void init_spades_score_function_correction (utility::options::OptionCollection &options)
 Alter the water/water and water/non-water solvation potential if the score:water_hybrid_sf flag is on the command line. More...
 
void init_gen_potential_settings (utility::options::OptionCollection &options)
 Initialize new atom types for Rosetta generic potential. More...
 
void init_dna_correction (utility::options::OptionCollection &options)
 Apply some DNA-specific mods that are still in testing phase; only if -corrections::newdna present. More...
 

Variables

static EnergyMethodRegistrator
< scoring::aa_repeat_energy::AARepeatEnergyCreator
AARepeatEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::aa_composition_energy::AACompositionEnergyCreator
AACompositionEnergyCreator_registrator
 
static EnergyMethodRegistrator
< pack::guidance_scoreterms::approximate_buried_unsat_penalty::ApproximateBuriedUnsatPenaltyCreator
ApproximateBuriedUnsatPenaltyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::constraints::ConstraintsEnergyCreator
ConstraintsEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::disulfides::CentroidDisulfideEnergyCreator
CentroidDisulfideEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::disulfides::DisulfideMatchingEnergyCreator
DisulfideMatchingEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::disulfides::FullatomDisulfideEnergyCreator
FullatomDisulfideEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::etable::EtableEnergyCreator
EtableEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::etable::EtableClassicIntraEnergyCreator
EtableClassicIntraEnergyCreator_registrator
 
static EnergyMethodRegistrator
< pack::guidance_scoreterms::hbnet_energy::HBNetEnergyCreator
HBNetEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::hbonds::HBondEnergyCreator
HBondEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::mhc_epitope_energy::MHCEpitopeEnergyCreator
MHCEpitopeEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::hbonds::NPDHBondEnergyCreator
NPDHBondEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::ArgCationPiEnergyCreator
ArgCationPiEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::AspartimidePenaltyEnergyCreator
AspartimidePenaltyEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::ChainbreakEnergyCreator
ChainbreakEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::BranchEnergyCreator
BranchEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::CenPairEnergyCreator
CenPairEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::CenPairMotifEnergyCreator
CenPairMotifEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::CenPairMotifDegreeEnergyCreator
CenPairMotifDegreeEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::ContactOrderEnergyCreator
ContactOrderEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::IntermolEnergyCreator
IntermolEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::MissingEnergyCreator
MissingEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::EnvEnergyCreator
EnvEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::EnvSmoothEnergyCreator
EnvSmoothEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::OmegaTetherEnergyCreator
OmegaTetherEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::OtherPoseEnergyCreator
OtherPoseEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::NMerRefEnergyCreator
NMerRefEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::NMerPSSMEnergyCreator
NMerPSSMEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::NMerSVMEnergyCreator
NMerSVMEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::P_AA_EnergyCreator
P_AA_EnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::P_AA_ss_EnergyCreator
P_AA_ss_EnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::P_AA_pp_EnergyCreator
P_AA_pp_EnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::AbegoEnergyCreator
AbegoEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::PackStatEnergyCreator
PackStatEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::PairEnergyCreator
PairEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::PeptideBondEnergyCreator
PeptideBondEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::ProClosureEnergyCreator
ProClosureEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::BurialEnergyCreator
BurialCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::Burial_v2EnergyCreator
Burial_v2Creator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::CovalentLabelingEnergyCreator
CovalentLabelingEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::CovalentLabelingFAEnergyCreator
CovalentLabelingFAEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::HRFDynamicsEnergyCreator
HRFDynamicsEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::HRF_MSLabelingEnergyCreator
HRF_MSLabelingEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::RG_Energy_FastCreator
RG_Energy_FastCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::RG_LocalEnergyCreator
RG_LocalEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::SA_EnergyCreator
SA_EnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::SSElementMotifContactEnergyCreator
SSElementMotifContactEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::D2H_SA_EnergyCreator
D2H_SA_EnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::ProQ_EnergyCreator
ProQ_EnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::RMS_EnergyCreator
RMS_EnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::RamaPreProEnergyCreator
RamaPreProEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::RamachandranEnergy2BCreator
RamachandranEnergy2BCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::RamachandranEnergyCreator
RamachandranEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::ReferenceEnergyCreator
ReferenceEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::ReferenceEnergyNoncanonicalCreator
ReferenceEnergyNoncanonicalCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::SecondaryStructureEnergyCreator
SecondaryStructureEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::dfire::DFIRE_EnergyCreator
DFIRE_EnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::vdwaals::VDW_EnergyCreator
VDW_EnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::GoapEnergyCreator
GoapEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::RingClosureEnergyCreator
RingClosureEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::AromaticBackboneRestraintEnergyCreator
AromaticBackboneRestraintEnergyCreator_registrator
 
static EnergyMethodRegistrator
< carbohydrates::SugarBackboneEnergyCreator
SugarBackboneEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::util_methods::DumpTrajectoryEnergyCreator
DumpTrajectoryEnergy_registrator
 
static EnergyMethodRegistrator
< scoring::netcharge_energy::NetChargeEnergyCreator
NetChargeEnergyCreator_registrator
 
static EnergyMethodRegistrator
< pack::guidance_scoreterms::buried_unsat_penalty::BuriedUnsatPenaltyCreator
BuriedUnsatPenaltyCreator_registrator
 
static EnergyMethodRegistrator
< pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyEnergyCreator
VoidsPenaltyEnergyCreator_registrator
 
static EnergyMethodRegistrator
< pack::dunbrack::DunbrackEnergyCreator
DunbrackEnergyCreator_registrator
 
static EnergyMethodRegistrator
< pack::dunbrack::cenrot::CenRotDunEnergyCreator
CenRotDunEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::nv::NVscoreCreator
NVscoreCreator_registrator
 
static EnergyMethodRegistrator
< scoring::orbitals::OrbitalsScoreCreator
OrbitalsScoreCreator_registrator
 
static EnergyMethodRegistrator
< scoring::interface_::DDPscoreCreator
DDPscoreCreator_registrator
 
static EnergyMethodRegistrator
< scoring::carbon_hbonds::CarbonHBondEnergyCreator
CarbonHBondEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::custom_pair_distance::FullatomCustomPairDistanceEnergyCreator
FullatomCustomPairDistanceEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::CustomAtomPairEnergyCreator
CustomAtomPairEnergy_registrator
 
static EnergyMethodRegistrator
< scoring::electron_density::FastDensEnergyCreator
FastDensEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::electron_density::ElecDensCenEnergyCreator
ElecDensCenEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::electron_density::ElecDensAllAtomCenEnergyCreator
ElecDensAllAtomCenEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::electron_density::ElecDensEnergyCreator
ElecDensEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::cryst::XtalMLEnergyCreator
XtalMLEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::electron_density_atomwise::ElecDensAtomwiseEnergyCreator
ElecDensAtomwiseEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::geometric_solvation::ExactOccludedHbondSolEnergyCreator
ExactOccludedHbondSolEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::geometric_solvation::ContextDependentGeometricSolEnergyCreator
ContextDependentGeometricSolEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::geometric_solvation::ContextIndependentGeometricSolEnergyCreator
ContextIndependentGeometricSolEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::geometric_solvation::OccludedHbondSolEnergyCreator
OccludedHbondSolEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::geometric_solvation::OccludedHbondSolEnergy_onebodyCreator
OccludedHbondSolEnergy_onebodyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::elec::FA_ElecEnergyCreator
FA_ElecEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::elec::RNA_FA_ElecEnergyCreator
RNA_FA_ElecEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::elec::FA_ElecEnergyAroAroCreator
FA_ElecEnergyAroAroCreator_registrator
 
static EnergyMethodRegistrator
< scoring::elec::FA_ElecEnergyAroAllCreator
FA_ElecEnergyAroAllCreator_registrator
 
static EnergyMethodRegistrator
< scoring::elec::FA_GrpElecEnergyCreator
FA_GrpElecEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::hackaro::HackAroEnergyCreator
HackAroEnergyCreator_registrator
 
static EnergyMethodRegistrator
< energy_methods::DEEREnergyCreator
DEEREnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::dna::DNAChiEnergyCreator
DNAChiEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::dna::DNATorsionEnergyCreator
DNATorsionEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::loop_graph::LoopCloseEnergyCreator
LoopCloseEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::magnesium::MgEnergyCreator
MgEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::magnesium::RNA_MgPointEnergyCreator
RNA_MgPointEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::DNA_BaseEnergyCreator
DNA_BaseEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::DirectReadoutEnergyCreator
DirectReadoutEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::DistanceChainbreakEnergyCreator
DistanceChainbreakEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::Fa_MbenvEnergyCreator
Fa_MbenvEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::Fa_MbsolvEnergyCreator
Fa_MbsolvEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::FreeDOF_EnergyCreator
FreeDOF_EnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::GenBornEnergyCreator
GenBornEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::GenericBondedEnergyCreator
GenericBondedEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::VdWTinkerEnergyCreator
VdWTinkerEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::MultipoleElecEnergyCreator
MultipoleElecEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::SASAEnergyCreator
SASAEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::FACTSEnergyCreator
FACTSEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::HybridVDW_EnergyCreator
HybridVDW_EnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::LK_PolarNonPolarEnergyCreator
LK_PolarNonPolarEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::LK_hackCreator
LK_hackCreator_registrator
 
static EnergyMethodRegistrator
< scoring::lkball::LK_BallEnergyCreator
LK_BallEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::LinearChainbreakEnergyCreator
LinearChainbreakEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::LinearBranchEnergyCreator
LinearBranchEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::MMBondAngleEnergyCreator
MMBondAngleEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::CartesianBondedEnergyCreator
CartesianBondedEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::MMBondLengthEnergyCreator
MMBondLengthEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::MMTorsionEnergyCreator
MMTorsionEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::MMLJEnergyInterCreator
MMLJEnergyInterCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::MMLJEnergyIntraCreator
MMLJEnergyIntraCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::MembraneCbetaEnergyCreator
MembraneCbetaEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::MembraneCenPairEnergyCreator
MembraneCenPairEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::MembraneEnvEnergyCreator
MembraneEnvEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::MembraneEnvPenaltiesCreator
MembraneEnvPenaltiesCreator_registrator
 
static EnergyMethodRegistrator
< scoring::membrane::MPPairEnergyCreator
MPPairEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::membrane::MPEnvEnergyCreator
MPEnvEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::membrane::MPCbetaEnergyCreator
MPCbetaEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::membrane::MPNonHelixPenaltyCreator
MPNonHelixPenaltyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::membrane::MPTerminiPenaltyCreator
MPTerminiPenaltyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::membrane::MPTMProjPenaltyCreator
MPTMProjPenaltyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::membrane::FaMPEnvEnergyCreator
FaMPEnvEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::membrane::FaMPSolvEnergyCreator
FaMPSolvEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::membrane::FaMPEnvSmoothEnergyCreator
FaMPEnvSMoothEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::membrane::MPResidueLipophilicityEnergyCreator
MPResidueLipophilicityEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::membrane::MPHelicalityEnergyCreator
MPHelicalityEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::membrane::MPSpanInsertionEnergyCreator
MPSpanInsertionEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::membrane::MPSpanAngleEnergyCreator
MPSpanAngleEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::SmoothCenPairEnergyCreator
SmoothCenPairEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::SmoothEnvEnergyCreator
SmoothEnvEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::CenRotPairEnergyCreator
CenRotPairEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::CenRotEnvEnergyCreator
CenRotEnvEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::CenHBEnergyCreator
CenHBEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::MembraneLipoCreator
MembraneLipoCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::MembraneEnvSmoothEnergyCreator
MembraneEnvSmoothEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::pHEnergyCreator
pHEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::ChemicalShiftAnisotropyEnergyCreator
ChemicalShiftAnisotropyEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::DipolarCouplingEnergyCreator
DipolarCouplingEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::ResidualDipolarCouplingEnergyCreator
ResidualDipolarCouplingEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::ResidualDipolarCouplingEnergy_RohlCreator
ResidualDipolarCouplingEnergy_RohlCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::MotifDockEnergyCreator
MotifDockEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::SuckerEnergyCreator
SuckerEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::GaussianOverlapEnergyCreator
GaussianOverlapEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::YHHPlanarityEnergyCreator
YYHPlanarityEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::HydroxylTorsionEnergyCreator
HydroxylTorsionEnergyCreator_registrator
 
static EnergyMethodRegistrator
< pack::interaction_graph::SurfaceEnergyCreator
SurfaceEnergyCreator_registrator
 
static EnergyMethodRegistrator
< pack::interaction_graph::HPatchEnergyCreator
HPatchEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::SymmetricLigandEnergyCreator
SymmetricLigandEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::UnfoldedStateEnergyCreator
UnfoldedStateEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::SplitUnfoldedTwoBodyEnergyCreator
SplitUnfoldedTwoBodyEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::WaterAdductHBondEnergyCreator
WaterAdductHBondEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::WaterAdductIntraEnergyCreator
WaterAdductIntraEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::WaterSpecificEnergyCreator
WaterSpecificEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::packing::HolesEnergyCreator
HolesEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::packing::SurfVolEnergyCreator
SurfVolEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::packing::SurfEnergyCreator
SurfEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::RG_Energy_RNACreator
RG_Energy_RNACreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::RNA_BulgeEnergyCreator
RNA_BulgeEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::data::RNA_ChemicalMappingEnergyCreator
RNA_ChemicalMappingEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::data::RNA_DataBackboneEnergyCreator
RNA_DataBackboneEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::RNA_FullAtomStackingEnergyCreator
RNA_FullAtomStackingEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::RNA_JR_SuiteEnergyCreator
RNA_JR_SuiteEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::RNA_LJ_BaseEnergyCreator
RNA_LJ_BaseEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::RNA_PairwiseLowResolutionEnergyCreator
RNA_PairwiseLowResolutionEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::RNA_PartitionEnergyCreator
RNA_PartitionEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::RNP_LowResEnergyCreator
RNP_LowResEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::RNP_LowResPairDistEnergyCreator
RNP_LowResPairDistEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::RNP_LowResStackEnergyCreator
RNP_LowResStackEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::RNA_StubCoordinateEnergyCreator
RNA_StubCoordinateEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::RNA_SugarCloseEnergyCreator
RNA_SugarCloseEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::RNA_SuiteEnergyCreator
RNA_SuiteEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::TNA_SuiteEnergyCreator
TNA_SuiteEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::RNA_TorsionEnergyCreator
RNA_TorsionEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::RNA_VDW_EnergyCreator
RNA_VDW_EnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::RNA_FullAtomVDW_BasePhosphateCreator
RNA_FullAtomVDW_BasePhosphateCreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::StackElecEnergyCreator
StackElecEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::rna::chemical_shift::RNA_ChemicalShiftEnergyCreator
NA_ChemicalShiftEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::sym_e::symECreator
symECreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::PoissonBoltzmannEnergyCreator
PoissonBoltzmannEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::saxs::FastSAXSEnergyCreator
FastSAXSEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::saxs::SAXSEnergyCreatorCEN
SAXSEnergyCreatorCEN_registrator
 
static EnergyMethodRegistrator
< scoring::saxs::SAXSEnergyCreatorFA
SAXSEnergyCreatorFA_registrator
 
static EnergyMethodRegistrator
< scoring::saxs::SAXSEnergyCreator
SAXSEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::methods::PointWaterEnergyCreator
PointWaterEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::fiber_diffraction::FiberDiffractionEnergyCreator
FiberDiffractionEnergyCreator_registrator
 
static EnergyMethodRegistrator
< scoring::fiber_diffraction::FiberDiffractionEnergyDensCreator
FiberDiffractionEnergyDensCreator_registrator
 
static
RotamerLibrarySpecificationRegistrator
< chemical::rotamers::BasicRotamerLibrarySpecificationCreator
BasicRotamerLibrarySpecificationCreator_registrator
 
static
RotamerLibrarySpecificationRegistrator
< chemical::rotamers::CenrotRotamerLibrarySpecificationCreator
CenrotRotamerLibrarySpecificationCreator_registrator
 
static
RotamerLibrarySpecificationRegistrator
< chemical::rotamers::DunbrackRotamerLibrarySpecificationCreator
DunbrackRotamerLibrarySpecificationCreator_registrator
 
static
RotamerLibrarySpecificationRegistrator
< chemical::rotamers::NCAARotamerLibrarySpecificationCreator
NCAARotamerLibrarySpecificationCreator_registrator
 
static
RotamerLibrarySpecificationRegistrator
< chemical::rotamers::PDBRotamerLibrarySpecificationCreator
PDBRotamerLibrarySpecificationCreator_registrator
 
static
SingleResidueRotamerLibraryRegistrator
< pack::dunbrack::SingleResidueDunbrackLibraryCreator
SingleResidueDunbrackLibraryCreator_registrator
 
static
SingleResidueRotamerLibraryRegistrator
< pack::rotamers::SingleBasicRotamerLibraryCreator
SingleBasicRotamerLibraryCreator_registrator
 
static
SingleResidueRotamerLibraryRegistrator
< pack::dunbrack::cenrot::SingleResidueCenrotLibraryCreator
SingleCenrotRotamerLibraryCreator_registrator
 
static
SingleResidueRotamerLibraryRegistrator
< pack::rotamers::SingleLigandRotamerLibraryCreator
SingleLigandRotamerLibraryCreator_registrator
 
static
SingleResidueRotamerLibraryRegistrator
< pack::rotamers::SingleNCAARotamerLibraryCreator
SingleNCAARotamerLibraryCreator_registrator
 
static
SingleResidueRotamerLibraryRegistrator
< pack::rotamers::StoredRotamerLibraryCreator
StoredRotamerLibraryCreator_registrator
 
static ConstraintRegistrator
< core::scoring::constraints::AmbiguousConstraintCreator
AmbiguousConstraintCreator_registrator
 
static ConstraintRegistrator
< core::scoring::constraints::AmbiguousNMRConstraintCreator
AmbiguousNMRConstraintCreator_registrator
 
static ConstraintRegistrator
< core::scoring::constraints::AmbiguousNMRDistanceConstraintCreator
AmbiguousNMRDistanceConstraintCreator_registrator
 
static ConstraintRegistrator
< core::scoring::constraints::AngleConstraintCreator
AngleConstraintCreator_registrator
 
static ConstraintRegistrator
< core::scoring::constraints::AtomPairConstraintCreator
AtomPairConstraintCreator_registrator
 
static ConstraintRegistrator
< core::scoring::constraints::BasePairConstraintCreator
BasePairConstraintCreator_registrator
 
static ConstraintRegistrator
< core::scoring::constraints::BigBinConstraintCreator
BigBinConstraintCreator_registrator
 
static ConstraintRegistrator
< core::scoring::constraints::CoordinateConstraintCreator
CoordinateConstraintCreator_registrator
 
static ConstraintRegistrator
< core::scoring::constraints::DihedralConstraintCreator
DihedralConstraintCreator_registrator
 
static ConstraintRegistrator
< core::scoring::constraints::DihedralPairConstraintCreator
DihedralPairConstraintCreator_registrator
 
static ConstraintRegistrator
< core::scoring::constraints::KofNConstraintCreator
KofNConstraintCreator_registrator
 
static ConstraintRegistrator
< core::scoring::constraints::LocalCoordinateConstraintCreator
LocalCoordinateConstraintCreator_registrator
 
static ConstraintRegistrator
< core::scoring::constraints::MultiConstraintCreator
MultiConstraintCreator_registrator
 
static ConstraintRegistrator
< core::scoring::constraints::NamedAngleConstraintCreator
NamedAngleConstraintCreator_registrator
 
static ConstraintRegistrator
< core::scoring::constraints::FabConstraintCreator
FabConstraintCreator_registrator
 
static ConstraintRegistrator
< core::pack::dunbrack::DunbrackConstraintCreator
DunbrackConstraintCreator_registrator
 
static ConstraintRegistrator
< core::scoring::constraints::SiteConstraintCreator
SiteConstraintCreator_registrator
 
static ConstraintRegistrator
< core::scoring::constraints::SiteConstraintResiduesCreator
SiteConstraintResiduesCreator_registrator
 
static ConstraintRegistrator
< core::scoring::constraints::SequenceProfileConstraintCreator
SequenceProfileConstraintCreator_registrator
 
static SilentStructRegistrator
< core::io::silent::ProteinSilentStructCreator
ProteinSilentStructCreator_registrator
 
static SilentStructRegistrator
< core::io::silent::ProteinSilentStruct_SinglePrecCreator
ProteinSilentStruct_SinglePrecCreator_registrator
 
static SilentStructRegistrator
< core::io::silent::RNA_SilentStructCreator
RNA_SilentStructCreator_registrator
 
static SilentStructRegistrator
< core::import_pose::PDBSilentStructCreator
PDBSilentStructCreator_registrator
 
static SilentStructRegistrator
< core::io::silent::BinarySilentStructCreator
BinarySilentStructCreator_registrator
 
static SilentStructRegistrator
< core::io::silent::ScoreFileSilentStructCreator
ScoreFileSilentStructCreator_registrator
 
static SilentStructRegistrator
< core::io::silent::ScoreJumpFileSilentStructCreator
ScoreJumpFileSilentStructCreator_registrator
 
static SilentStructRegistrator
< core::io::silent::RigidBodySilentStructCreator
RigidBodySilentStructCreator_registrator
 
static SequenceRegistrator
< core::sequence::SimpleSequenceCreator
SimpleSequenceCreator_registrator
 
static SequenceRegistrator
< core::sequence::SequenceProfileCreator
SequenceProfileCreator_registrator
 
static SequenceRegistrator
< core::sequence::SequenceCouplingCreator
SequenceCouplingCreator_registrator
 
static SequenceRegistrator
< core::sequence::CompositeSequenceCreator
CompositeSequenceCreator_registrator
 
static
TaskOperationRegistrator
< RestrictYSDesignCreator
RestrictYSDesignCreator_registrator
 
static
TaskOperationRegistrator
< PreventRepackingCreator
PreventRepackingCreator_registrator
 
static
TaskOperationRegistrator
< PreserveCBetaCreator
PreserveCBetaCreator_registrator
 
static
TaskOperationRegistrator
< AppendRotamerSetCreator
AppendRotamerSetCreator_registrator
 
static
TaskOperationRegistrator
< AppendRotamerCreator
AppendRotamerCreator_registrator
 
static
TaskOperationRegistrator
< DesignRestrictionsCreator
DesignRestrictionsCreator_registrator
 
static
TaskOperationRegistrator
< EnableMultiCoolAnnealerCreator
EnableMultiCoolAnnealerCreator_registrator
 
static
TaskOperationRegistrator
< EnableSmartAnnealerCreator
EnableSmartAnnealerCreator_registrator
 
static
TaskOperationRegistrator
< ExtraRotamersCreator
ExtraRotamersCreator_registrator
 
static
TaskOperationRegistrator
< ExtraChiCutoffCreator
ExtraChiCutoffCreator_registrator
 
static
TaskOperationRegistrator
< SetRotamerCouplingsCreator
SetRotamerCouplingsCreator_registrator
 
static
TaskOperationRegistrator
< SetRotamerLinksCreator
SetRotamerLinksCreator_registrator
 
static
TaskOperationRegistrator
< ReadResfileCreator
ReadResfileCreator_registrator
 
static
TaskOperationRegistrator
< ReadResfileAndObeyLengthEventsCreator
ReadResfileAndObeyLengthEventsCreator_registrator
 
static
TaskOperationRegistrator
< IncludeCurrentCreator
IncludeCurrentCreator_registrator
 
static
TaskOperationRegistrator
< InitializeExtraRotsFromCommandlineCreator
InitializeExtraRotsFromCommandlineCreator_registrator
 
static
TaskOperationRegistrator
< InitializeFromCommandlineCreator
InitializeFromCommandlineCreator_registrator
 
static
TaskOperationRegistrator
< UseMultiCoolAnnealerCreator
UseMultiCoolAnnealerCreator_registrator
 
static
TaskOperationRegistrator
< InitializeFromOptionCollectionCreator
InitializeFromOptionCollectionCreator_registrator
 
static
TaskOperationRegistrator
< ExtraRotamersGenericCreator
ExtraRotamersGenericCreator_registrator
 
static
TaskOperationRegistrator
< RotamerExplosionCreator
RotamerExplosionCreator_registrator
 
static
TaskOperationRegistrator
< RestrictAbsentCanonicalAASCreator
RestrictAbsentCanonicalAASCreator_registrator
 
static
TaskOperationRegistrator
< DisallowIfNonnativeCreator
DisallowIfNonnativeCreator_registrator
 
static
TaskOperationRegistrator
< RestrictToSpecifiedBaseResidueTypesCreator
RestrictToSpecifiedBaseResidueTypesCreator_registrator
 
static
TaskOperationRegistrator
< ProhibitSpecifiedBaseResidueTypesCreator
ProhibitSpecifiedBaseResidueTypesCreator_registrator
 
static
TaskOperationRegistrator
< RestrictToResiduePropertiesCreator
RestrictToResiduePropertiesCreator_registrator
 
static
TaskOperationRegistrator
< ProhibitResiduePropertiesCreator
ProhibitResiduePropertiesCreator_registrator
 
static
TaskOperationRegistrator
< RestrictResidueToRepackingCreator
RestrictResidueToRepackingCreator_registrator
 
static
TaskOperationRegistrator
< RestrictToRepackingCreator
RestrictToRepackingCreator_registrator
 
static
TaskOperationRegistrator
< RestrictInteractionGraphThreadsOperationCreator
RestrictInteractionGraphThreadsOperationCreator_registrator
 
static
TaskOperationRegistrator
< OperateOnCertainResiduesCreator
OperateOnCertainResiduesCreator_registrator
 
static
TaskOperationRegistrator
< OperateOnResidueSubsetCreator
OperateOnResidueSubsetCreator_registrator
 
static
TaskOperationRegistrator
< NoRepackDisulfidesCreator
NoRepackDisulfidesCreator_registrator
 
static
TaskOperationRegistrator
< ClashBasedRepackShellCreator
ClashBasedRepackShellCreator_registrator
 
static
TaskOperationRegistrator
< OptCysHGCreator
OptCysHGCreator_registrator
 
static
TaskOperationRegistrator
< OptHCreator
OptHCreator_registrator
 
static
TaskOperationRegistrator
< KeepSequenceSymmetryCreator
KeepSequenceSymmetryCreator_registrator
 
static
ResLvlTaskOperationRegistrator
< RestrictToRepackingRLTCreator
RestrictToRepackingRLTCreator_registrator
 
static
ResLvlTaskOperationRegistrator
< RestrictAbsentCanonicalAASRLTCreator
RestrictAbsentCanonicalAASRLTCreator_registrator
 
static
ResLvlTaskOperationRegistrator
< RestrictAbsentCanonicalAASExceptNativeRLTCreator
RestrictAbsentCanonicalAASExceptNativeRLTCreator_registrator
 
static
ResLvlTaskOperationRegistrator
< DisallowIfNonnativeRLTCreator
DisallowIfNonnativeRLTCreator_registrator
 
static
ResLvlTaskOperationRegistrator
< PreventRepackingRLTCreator
PreventRepackingRLTCreator_registrator
 
static
ResLvlTaskOperationRegistrator
< AddBehaviorRLTCreator
AddBehaviorRLTCreator_registrator
 
static
ResLvlTaskOperationRegistrator
< IncludeCurrentRLTCreator
IncludeCurrentRLTCreator_registrator
 
static
ResLvlTaskOperationRegistrator
< PreserveCBetaRLTCreator
PreserveCBetaRLTCreator_registrator
 
static
ResLvlTaskOperationRegistrator
< ExtraChiCutoffRLTCreator
ExtraChiCutoffRLTCreator_registrator
 
static
ResLvlTaskOperationRegistrator
< ExtraRotamersGenericRLTCreator
ExtraRotamersGenericRLTCreator_registrator
 
static ResFilterRegistrator
< ResidueHasPropertyCreator
ResidueHasPropertyCreator_registrator
 
static ResFilterRegistrator
< ResiduePDBInfoHasLabelCreator
ResiduePDBInfoHasLabelCreator_registrator
 
static ResFilterRegistrator
< ResidueLacksPropertyCreator
ResidueLacksPropertyCreator_registrator
 
static ResFilterRegistrator
< ResidueName3IsCreator
ResidueName3IsCreator_registrator
 
static ResFilterRegistrator
< ResidueName3IsntCreator
ResidueName3IsntCreator_registrator
 
static ResFilterRegistrator
< ResidueIndexIsCreator
ResidueIndexIsCreator_registrator
 
static ResFilterRegistrator
< ResidueIndexIsntCreator
ResidueIndexIsntCreator_registrator
 
static ResFilterRegistrator
< ChainIsCreator
ChainIsCreator_registrator
 
static ResFilterRegistrator
< ChainIsntCreator
ChainIsntCreator_registrator
 
static ResFilterRegistrator
< AnyResFilterCreator
AnyResFilterCreator_registrator
 
static ResFilterRegistrator
< AllResFilterCreator
AllResFilterCreator_registrator
 
static ResFilterRegistrator
< NoResFilterCreator
NoResFilterCreator_registrator
 
static ResFilterRegistrator
< ResidueTypeFilterCreator
ResidueTypeResFilterCreator_registrator
 
static
ResidueSelectorRegistrator
< AndResidueSelectorCreator
reg_AndResidueSelectorCreator
 
static
ResidueSelectorRegistrator
< BinSelectorCreator
reg_BinSelectorCreator
 
static
ResidueSelectorRegistrator
< BondedResidueSelectorCreator
reg_BondedResidueSelectorCreator
 
static
ResidueSelectorRegistrator
< ChainSelectorCreator
reg_ChainSelectorCreator
 
static
ResidueSelectorRegistrator
< core::pack::task::residue_selector::ClashBasedShellSelectorCreator
reg_ClashBasedShellSelectorCreator
 
static
ResidueSelectorRegistrator
< CloseContactResidueSelectorCreator
reg_CloseContactResidueSelectorCreator
 
static
ResidueSelectorRegistrator
< DensityFitResidueSelectorCreator
reg_DensityFitResidueSelectorCreator
 
static
ResidueSelectorRegistrator
< GlycanResidueSelectorCreator
reg_GlycanResidueSelectorCreator
 
static
ResidueSelectorRegistrator
< RandomGlycanFoliageSelectorCreator
reg_RandomGlycanFoliageSelectorCreator
 
static
ResidueSelectorRegistrator
< GlycanLayerSelectorCreator
reg_GlycanLayerSelectorCreator
 
static
ResidueSelectorRegistrator
< GlycanSequonsSelectorCreator
reg_GlycanSequonsSelectorCreator
 
static
ResidueSelectorRegistrator
< InterGroupInterfaceByVectorSelectorCreator
reg_InterGroupInterfaceByVectorSelectorCreator
 
static
ResidueSelectorRegistrator
< JumpDownstreamSelectorCreator
reg_JumpDownstreamSelectorCreator
 
static
ResidueSelectorRegistrator
< JumpUpstreamSelectorCreator
reg_JumpUpstreamSelectorCreator
 
static
ResidueSelectorRegistrator
< AsymmetricUnitSelectorCreator
reg_AsymmetricUnitSelectorCreator
 
static
ResidueSelectorRegistrator
< NeighborhoodResidueSelectorCreator
reg_NeighborhoodResidueSelectorCreator
 
static
ResidueSelectorRegistrator
< NotResidueSelectorCreator
reg_NotResidueSelectorCreator
 
static
ResidueSelectorRegistrator
< NumNeighborsSelectorCreator
reg_NumNeighborsSelectorCreator
 
static
ResidueSelectorRegistrator
< LayerSelectorCreator
reg_LayerSelectorCreator
 
static
ResidueSelectorRegistrator
< OrResidueSelectorCreator
reg_OrResidueSelectorCreator
 
static
ResidueSelectorRegistrator
< PhiSelectorCreator
reg_PhiSelectorCreator
 
static
ResidueSelectorRegistrator
< PrimarySequenceNeighborhoodSelectorCreator
reg_PrimarySequenceNeighborhoodSelectorCreator
 
static
ResidueSelectorRegistrator
< RandomResidueSelectorCreator
reg_RandomResidueSelectorCreator
 
static
ResidueSelectorRegistrator
< ResidueIndexSelectorCreator
reg_ResidueIndexSelectorCreator
 
static
ResidueSelectorRegistrator
< ResidueNameSelectorCreator
reg_ResidueNameSelectorCreator
 
static
ResidueSelectorRegistrator
< ResidueInSequenceMotifSelectorCreator
reg_ResidueInSequenceMotifSelectorCreator
 
static
ResidueSelectorRegistrator
< ResiduePropertySelectorCreator
reg_ResiduePropertySelectorCreator
 
static
ResidueSelectorRegistrator
< ResidueSpanSelectorCreator
reg_ResidueSpanSelectorCreator
 
static
ResidueSelectorRegistrator
< TrueResidueSelectorCreator
reg_TrueResidueSelectorCreator
 
static
ResidueSelectorRegistrator
< FalseResidueSelectorCreator
reg_FalseResidueSelectorCreator
 
static
ResidueSelectorRegistrator
< ResidueInMembraneSelectorCreator
reg_ResidueInMembraneSelectorCreator
 
static
ResidueSelectorRegistrator
< ResiduePDBInfoHasLabelSelectorCreator
reg_ResiduePDBInfoHasLabelSelectorCreator
 
static
ResidueSelectorRegistrator
< SecondaryStructureSelectorCreator
reg_SecondaryStructureSelectorCreator
 
static
ResidueSelectorRegistrator
< SSElementSelectorCreator
reg_SSElementSelectorCreator
 
static
ResidueSelectorRegistrator
< SymmetricalResidueSelectorCreator
reg_SymmetricalResidueSelectorCreator
 
static
ResidueSelectorRegistrator
< ScoreTermValueBasedSelectorCreator
reg_ScoreTermValueBasedSelectorCreator
 
static
ResidueSelectorRegistrator
< SliceResidueSelectorCreator
reg_SliceResidueSelectorCreator
 
static JumpSelectorRegistrator
< AndJumpSelectorCreator
reg_AndJumpSelectorCreator
 
static JumpSelectorRegistrator
< OrJumpSelectorCreator
reg_OrJumpSelectorCreator
 
static JumpSelectorRegistrator
< NotJumpSelectorCreator
reg_NotJumpSelectorCreator
 
static JumpSelectorRegistrator
< JumpIndexSelectorCreator
reg_JumpIndexSelectorCreator
 
static JumpSelectorRegistrator
< InterchainJumpSelectorCreator
reg_InterchainJumpSelectorCreator
 
static
PackerPaletteRegistrator
< CustomBaseTypePackerPaletteCreator
reg_CustomBaseTypePackerPaletteCreator
 
static
PackerPaletteRegistrator
< DefaultPackerPaletteCreator
reg_DefaultPackerPaletteCreator
 
static
PackerPaletteRegistrator
< NoDesignPackerPaletteCreator
reg_NoDesignPackerPaletteCreator
 
static
ResourceLoaderRegistrator
< core::conformation::symmetry::SymmDataLoaderCreator
SymmDataLoaderCreator_registrator
 
static
ResourceLoaderRegistrator
< core::import_pose::PoseResourceLoaderCreator
PoseResourceLoaderCreator_registrator
 
pre_talaris_2013_behavior_settings
const 
restore_sc12_settings
 

Function Documentation

void core::init::check_deprecated_flags ( )

Check for deprecated flags specified by the user and output error messages if necessary.

Check for deprecated flags and utility exit if any deprecated flags are detected.

If you deprecate a long standing flag, add a line to this function to describe what the deprecated flag has been replaced with. If the user specifies one of these flags, Rosetta will utility exit with a helpful message directing the user towards the new functionality

Referenced by init().

void core::init::check_load_fconfig ( )

Check if common config file exists and load it/them as flags files.

Referenced by init().

void core::init::init ( int  argc,
char *  argv[] 
)

Init basic core systems: options system, random system.

References check_deprecated_flags(), check_load_fconfig(), protocols::init::init(), init_complex_options(), init_crash_reporter(), init_mpi(), init_options(), init_paths(), init_profiling(), init_resources(), init_score_function_corrections(), init_source_revision(), init_tracers(), core::id::initialize_core_id_globals(), locate_rosetta_database(), random_delay(), and report_application_command().

Referenced by protocols::canonical_sampling::CanonicalSamplingMover::apply(), protocols::hybridization::BackboneTorsionPerturbation::BackboneTorsionPerturbation(), protocols::indexed_structure_store::search::bind_QueryDatabase(), protocols::md::CartesianMD::CartesianMD(), protocols::hybridization::CartesianSampler::CartesianSampler(), protocols::toolbox::KCluster::cluster(), protocols::LoopRebuild::desired_loops(), protocols::rpc::BasicCmdLineInit::do_init(), protocols::docking::DockingProtocol::DockingProtocol(), core::scoring::electron_density::ElectronDensity::ElectronDensity(), core::scoring::fiber_diffraction::FiberDiffraction::FiberDiffraction(), protocols::magnesium::SampleGrid::figure_out_box_bounds(), protocols::hybridization::FragmentBiasAssigner::FragmentBiasAssigner(), protocols::LoopRebuild::get_ccd_closure_exist(), protocols::LoopRebuild::get_chain_break_tolerance(), protocols::LoopRebuild::get_combine_if_fail_exist(), protocols::LoopRebuild::get_desired_loops_exist(), core::pose::rna::get_leontis_westhof_table(), protocols::LoopRebuild::get_loop_combine_rate(), protocols::LoopRebuild::get_looprlx_cycle_ratio(), protocols::magnesium::get_octahedral_uniform_rotation_sampler(), protocols::LoopRebuild::get_rmsd_tolerance(), protocols::LoopRebuild::get_score_filter_cutoff(), protocols::magnesium::get_water_uniform_rotation_sampler(), protocols::loophash::MPI_LoopHashRefine_Master::go(), protocols::mpi_refinement::MPI_Refine_Emperor::go(), protocols::mpi_refinement::MPI_Refine_Master::go(), protocols::loophash::MPI_LoopHashRefine_Emperor::go(), protocols::hybridization::HybridizeProtocol::HybridizeProtocol(), protocols::magnesium::MgHydrater::hydrate_magnesium_in_pose(), protocols::init::init(), init(), core::pose::xyzStripeHashPose::init_posehash(), protocols::sic_dock::xyzStripeHashPoseWithMeta::init_with_pose(), protocols::stepwise::monte_carlo::mover::initialize_attachment_type_name(), core::pose::full_model_info::initialize_full_model_parameter_type_name(), protocols::stepwise::monte_carlo::mover::initialize_move_type_name(), core::scoring::sasa::input_legrand_sasa_dats(), core::scoring::input_sasa_dats(), core::scoring::packstat::old::input_sasa_dats(), protocols::hybridization::InsertChunkMover::InsertChunkMover(), protocols::simple_filters::InterfaceHbondsFilter::InterfaceHbondsFilter(), protocols::simple_filters::InterfaceHydrophobicResidueContactsFilter::InterfaceHydrophobicResidueContactsFilter(), core::import_pose::is_blank_seq(), protocols::LoopRebuild::loop_model(), protocols::cyclic_peptide::PeptideStubMover::PeptideStubMover(), core::fragment::rna::FullAtomRNA_Fragments::read_vall_torsions(), core::io::silent::SilentStruct::rename_energies(), protocols::symmetry::SymShakeStructureMover::run_mc(), protocols::simple_moves::ShakeStructureMover::run_mc(), protocols::mpi_refinement::Serial_Refine::Serial_Refine(), protocols::simple_moves::ShakeStructureMover::set_temp_based_on_ens_diversity(), protocols::score_filters::ScoreCutoffFilter::set_unweighted(), protocols::LoopRebuild::shorten_long_terminal_loop(), protocols::sparta::Sparta::SpartaLib::SpartaLib(), protocols::moves::to_string(), and protocols::stepwise::modeler::rna::phosphate::to_string().

void core::init::init ( utility::vector1< std::string > const &  args)

wrapper for core system Init

References init().

void core::init::init_beta_correction ( utility::options::OptionCollection &  options)

Initialize the most recent beta score function (-beta)

References init_beta_july15_correction(), init_beta_nov16_correction(), and init_gen_potential_settings().

Referenced by init_score_function_corrections().

void core::init::init_beta_july15_correction ( utility::options::OptionCollection &  options)

Initialize the -beta_july15 score function.

References TR().

Referenced by init_beta_correction().

void core::init::init_beta_nov16_correction ( utility::options::OptionCollection &  options,
bool  setweight 
)

Initialize the -beta_nov16 score function.

References TR().

Referenced by init_beta_correction().

void core::init::init_complex_options ( )

After the tracers have been initialized, now go back and modify some of the values in the options system based on (hard coded) inter-flag relationships. Some of these relationships are set in the basic::options::process() function, some of them are handled in this .cc file.

Referenced by init().

void core::init::init_correct_correction ( utility::options::OptionCollection &  options)

Initialize the -correct correction.

References core::scoring::p_aa_pp.

Referenced by init_score_function_corrections().

void core::init::init_crash_reporter ( int  argc,
char *  argv[] 
)

Setup crash reporter.

Referenced by init().

void core::init::init_crystal_refinement_correction ( utility::options::OptionCollection &  options)

Initialize the crystal refinement correction.

Referenced by init_score_function_corrections().

void core::init::init_dna_correction ( utility::options::OptionCollection &  options)

Apply some DNA-specific mods that are still in testing phase; only if -corrections::newdna present.

Referenced by init_score_function_corrections().

void core::init::init_facts_correction ( utility::options::OptionCollection &  options)

Initialize the FACTS correction.

Referenced by init_score_function_corrections().

void core::init::init_gen_potential_settings ( utility::options::OptionCollection &  options)

Initialize new atom types for Rosetta generic potential.

References TR().

Referenced by init_beta_correction().

void core::init::init_hbond_sp2_correction ( utility::options::OptionCollection &  options)

Initialize the hbond Sp2 correction Deprecated as Talaris2013 becomes default.

References TR().

Referenced by init_score_function_corrections().

void core::init::init_mpi ( int  argc,
char *  argv[] 
)

Initialize MPI (message passing interface) for parallel applications.

void core::init::init_mpi ( int  ,
char **   
)

Referenced by init().

void core::init::init_nonideal_correction ( utility::options::OptionCollection &  options)

Initialize nonideal bond geometry correction.

References protocols::antibody::design::dualspace, core::scoring::get_score_function(), and TR().

Referenced by init_score_function_corrections().

void core::init::init_options ( int  argc,
char *  argv[] 
)

Initialize the option system, which manages command line options.

Referenced by init().

void core::init::init_paths ( )

Setup basic search paths.

References protocols::hybridization::path.

Referenced by init().

void core::init::init_pre_beta_nov15_etable ( utility::options::OptionCollection &  options)

Initialize the -pre_beta_nov15 etable.

Referenced by init_score_function_corrections().

void core::init::init_profiling ( )

Profiling measures execution performance.

Referenced by init().

void core::init::init_resources ( )

Set up system resources.

References PROCESS_STACK_SIZE.

Referenced by init().

void core::init::init_restore_score12prime ( utility::options::OptionCollection &  options)

restore the the score function to the Score12prime version

References revert_to_pre_talaris_2013_defaults().

void core::init::init_revert_to_pre_talaris_2013_mistake ( utility::options::OptionCollection &  options)

Initialize the "revert to before Talaris2013" mistake.

References revert_to_pre_talaris_2013_defaults().

Referenced by init_score_function_corrections().

void core::init::init_revert_to_talaris ( utility::options::OptionCollection &  options)

Initialize the revert-to-Talaris2014.

References TR().

Referenced by init_score_function_corrections().

void core::init::init_score_function_corrections ( utility::options::OptionCollection &  options)
void core::init::init_shapovalov_lib_fixes_enable_correction ( utility::options::OptionCollection &  options)

Initialize the -shapovalov_lib_fixes_enable correction.

Referenced by init_score_function_corrections().

void core::init::init_source_revision ( )

Choose to output source version control information?

Referenced by init().

void core::init::init_spades_score_function_correction ( utility::options::OptionCollection &  options)

Alter the water/water and water/non-water solvation potential if the score:water_hybrid_sf flag is on the command line.

References TR().

Referenced by init_score_function_corrections().

void core::init::init_tracers ( )

Tracers control output to std::cout and std::cerr.

References protocols::wum::mpi_rank().

Referenced by init().

void core::init::locate_rosetta_database ( )

Locate rosetta_database.

References protocols::hybridization::path.

Referenced by init().

void core::init::random_delay ( )

Choose to randomly delay execution to desyncronize parallel execution.

Referenced by init().

void core::init::report_application_command ( int  argc,
char *  argv[] 
)

Describe the application execution command.

Referenced by init().

void core::init::revert_to_pre_talaris_2013_defaults ( utility::options::OptionCollection &  options)
static basic::Tracer core::init::TR ( "core.init.score_function_corrections"  )
static
static basic::Tracer core::init::TR ( "core.init"  )
static

Variable Documentation

EnergyMethodRegistrator< scoring::aa_composition_energy::AACompositionEnergyCreator > core::init::AACompositionEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::aa_repeat_energy::AARepeatEnergyCreator > core::init::AARepeatEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::AbegoEnergyCreator > core::init::AbegoEnergyCreator_registrator
static
ResLvlTaskOperationRegistrator< AddBehaviorRLTCreator > core::init::AddBehaviorRLTCreator_registrator
static
ResFilterRegistrator< AllResFilterCreator > core::init::AllResFilterCreator_registrator
static
ConstraintRegistrator< core::scoring::constraints::AmbiguousConstraintCreator > core::init::AmbiguousConstraintCreator_registrator
static
ConstraintRegistrator< core::scoring::constraints::AmbiguousNMRConstraintCreator > core::init::AmbiguousNMRConstraintCreator_registrator
static
ConstraintRegistrator< core::scoring::constraints::AmbiguousNMRDistanceConstraintCreator > core::init::AmbiguousNMRDistanceConstraintCreator_registrator
static
ConstraintRegistrator< core::scoring::constraints::AngleConstraintCreator > core::init::AngleConstraintCreator_registrator
static
ResFilterRegistrator< AnyResFilterCreator > core::init::AnyResFilterCreator_registrator
static
TaskOperationRegistrator< AppendRotamerCreator > core::init::AppendRotamerCreator_registrator
static
TaskOperationRegistrator< AppendRotamerSetCreator > core::init::AppendRotamerSetCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::ArgCationPiEnergyCreator > core::init::ArgCationPiEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::AromaticBackboneRestraintEnergyCreator > core::init::AromaticBackboneRestraintEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::AspartimidePenaltyEnergyCreator > core::init::AspartimidePenaltyEnergyCreator_registrator
static
ConstraintRegistrator< core::scoring::constraints::AtomPairConstraintCreator > core::init::AtomPairConstraintCreator_registrator
static
ConstraintRegistrator< core::scoring::constraints::BasePairConstraintCreator > core::init::BasePairConstraintCreator_registrator
static
RotamerLibrarySpecificationRegistrator< chemical::rotamers::BasicRotamerLibrarySpecificationCreator > core::init::BasicRotamerLibrarySpecificationCreator_registrator
static
ConstraintRegistrator< core::scoring::constraints::BigBinConstraintCreator > core::init::BigBinConstraintCreator_registrator
static
SilentStructRegistrator< core::io::silent::BinarySilentStructCreator > core::init::BinarySilentStructCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::BranchEnergyCreator > core::init::BranchEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::Burial_v2EnergyCreator > core::init::Burial_v2Creator_registrator
static
EnergyMethodRegistrator< scoring::methods::BurialEnergyCreator > core::init::BurialCreator_registrator
static
EnergyMethodRegistrator< scoring::carbon_hbonds::CarbonHBondEnergyCreator > core::init::CarbonHBondEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::CartesianBondedEnergyCreator > core::init::CartesianBondedEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::CenHBEnergyCreator > core::init::CenHBEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::CenPairEnergyCreator > core::init::CenPairEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::CenPairMotifDegreeEnergyCreator > core::init::CenPairMotifDegreeEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::CenPairMotifEnergyCreator > core::init::CenPairMotifEnergyCreator_registrator
static
EnergyMethodRegistrator< pack::dunbrack::cenrot::CenRotDunEnergyCreator > core::init::CenRotDunEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::CenRotEnvEnergyCreator > core::init::CenRotEnvEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::CenRotPairEnergyCreator > core::init::CenRotPairEnergyCreator_registrator
static
RotamerLibrarySpecificationRegistrator< chemical::rotamers::CenrotRotamerLibrarySpecificationCreator > core::init::CenrotRotamerLibrarySpecificationCreator_registrator
static
EnergyMethodRegistrator< scoring::disulfides::CentroidDisulfideEnergyCreator > core::init::CentroidDisulfideEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::ChainbreakEnergyCreator > core::init::ChainbreakEnergyCreator_registrator
static
ResFilterRegistrator< ChainIsCreator > core::init::ChainIsCreator_registrator
static
ResFilterRegistrator< ChainIsntCreator > core::init::ChainIsntCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::ChemicalShiftAnisotropyEnergyCreator > core::init::ChemicalShiftAnisotropyEnergyCreator_registrator
static
TaskOperationRegistrator< ClashBasedRepackShellCreator > core::init::ClashBasedRepackShellCreator_registrator
static
SequenceRegistrator< core::sequence::CompositeSequenceCreator > core::init::CompositeSequenceCreator_registrator
static
EnergyMethodRegistrator< scoring::constraints::ConstraintsEnergyCreator > core::init::ConstraintsEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::ContactOrderEnergyCreator > core::init::ContactOrderEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::geometric_solvation::ContextDependentGeometricSolEnergyCreator > core::init::ContextDependentGeometricSolEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::geometric_solvation::ContextIndependentGeometricSolEnergyCreator > core::init::ContextIndependentGeometricSolEnergyCreator_registrator
static
ConstraintRegistrator< core::scoring::constraints::CoordinateConstraintCreator > core::init::CoordinateConstraintCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::CovalentLabelingEnergyCreator> core::init::CovalentLabelingEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::CovalentLabelingFAEnergyCreator> core::init::CovalentLabelingFAEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::CustomAtomPairEnergyCreator > core::init::CustomAtomPairEnergy_registrator
static
EnergyMethodRegistrator< scoring::methods::D2H_SA_EnergyCreator > core::init::D2H_SA_EnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::interface_::DDPscoreCreator > core::init::DDPscoreCreator_registrator
static
EnergyMethodRegistrator< energy_methods::DEEREnergyCreator > core::init::DEEREnergyCreator_registrator
static
TaskOperationRegistrator< DesignRestrictionsCreator > core::init::DesignRestrictionsCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::dfire::DFIRE_EnergyCreator > core::init::DFIRE_EnergyCreator_registrator
static
ConstraintRegistrator< core::scoring::constraints::DihedralConstraintCreator > core::init::DihedralConstraintCreator_registrator
static
ConstraintRegistrator< core::scoring::constraints::DihedralPairConstraintCreator > core::init::DihedralPairConstraintCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::DipolarCouplingEnergyCreator > core::init::DipolarCouplingEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::DirectReadoutEnergyCreator > core::init::DirectReadoutEnergyCreator_registrator
static
TaskOperationRegistrator< DisallowIfNonnativeCreator > core::init::DisallowIfNonnativeCreator_registrator
static
ResLvlTaskOperationRegistrator< DisallowIfNonnativeRLTCreator > core::init::DisallowIfNonnativeRLTCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::DistanceChainbreakEnergyCreator > core::init::DistanceChainbreakEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::disulfides::DisulfideMatchingEnergyCreator > core::init::DisulfideMatchingEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::DNA_BaseEnergyCreator > core::init::DNA_BaseEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::dna::DNAChiEnergyCreator > core::init::DNAChiEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::dna::DNATorsionEnergyCreator > core::init::DNATorsionEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::util_methods::DumpTrajectoryEnergyCreator > core::init::DumpTrajectoryEnergy_registrator
static
ConstraintRegistrator< core::pack::dunbrack::DunbrackConstraintCreator > core::init::DunbrackConstraintCreator_registrator
static
EnergyMethodRegistrator< pack::dunbrack::DunbrackEnergyCreator > core::init::DunbrackEnergyCreator_registrator
static
RotamerLibrarySpecificationRegistrator< chemical::rotamers::DunbrackRotamerLibrarySpecificationCreator > core::init::DunbrackRotamerLibrarySpecificationCreator_registrator
static
EnergyMethodRegistrator< scoring::electron_density::ElecDensAllAtomCenEnergyCreator > core::init::ElecDensAllAtomCenEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::electron_density_atomwise::ElecDensAtomwiseEnergyCreator > core::init::ElecDensAtomwiseEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::electron_density::ElecDensCenEnergyCreator > core::init::ElecDensCenEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::electron_density::ElecDensEnergyCreator > core::init::ElecDensEnergyCreator_registrator
static
TaskOperationRegistrator< EnableMultiCoolAnnealerCreator > core::init::EnableMultiCoolAnnealerCreator_registrator
static
TaskOperationRegistrator< EnableSmartAnnealerCreator > core::init::EnableSmartAnnealerCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::EnvEnergyCreator > core::init::EnvEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::EnvSmoothEnergyCreator > core::init::EnvSmoothEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::etable::EtableClassicIntraEnergyCreator > core::init::EtableClassicIntraEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::etable::EtableEnergyCreator > core::init::EtableEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::geometric_solvation::ExactOccludedHbondSolEnergyCreator > core::init::ExactOccludedHbondSolEnergyCreator_registrator
static
TaskOperationRegistrator< ExtraChiCutoffCreator > core::init::ExtraChiCutoffCreator_registrator
static
ResLvlTaskOperationRegistrator< ExtraChiCutoffRLTCreator > core::init::ExtraChiCutoffRLTCreator_registrator
static
TaskOperationRegistrator< ExtraRotamersCreator > core::init::ExtraRotamersCreator_registrator
static
TaskOperationRegistrator< ExtraRotamersGenericCreator > core::init::ExtraRotamersGenericCreator_registrator
static
ResLvlTaskOperationRegistrator< ExtraRotamersGenericRLTCreator > core::init::ExtraRotamersGenericRLTCreator_registrator
static
EnergyMethodRegistrator< scoring::elec::FA_ElecEnergyAroAllCreator > core::init::FA_ElecEnergyAroAllCreator_registrator
static
EnergyMethodRegistrator< scoring::elec::FA_ElecEnergyAroAroCreator > core::init::FA_ElecEnergyAroAroCreator_registrator
static
EnergyMethodRegistrator< scoring::elec::FA_ElecEnergyCreator > core::init::FA_ElecEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::elec::FA_GrpElecEnergyCreator > core::init::FA_GrpElecEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::Fa_MbenvEnergyCreator > core::init::Fa_MbenvEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::Fa_MbsolvEnergyCreator > core::init::Fa_MbsolvEnergyCreator_registrator
static
ConstraintRegistrator< core::scoring::constraints::FabConstraintCreator > core::init::FabConstraintCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::FACTSEnergyCreator > core::init::FACTSEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::membrane::FaMPEnvEnergyCreator > core::init::FaMPEnvEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::membrane::FaMPEnvSmoothEnergyCreator > core::init::FaMPEnvSMoothEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::membrane::FaMPSolvEnergyCreator > core::init::FaMPSolvEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::electron_density::FastDensEnergyCreator > core::init::FastDensEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::saxs::FastSAXSEnergyCreator > core::init::FastSAXSEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::fiber_diffraction::FiberDiffractionEnergyCreator > core::init::FiberDiffractionEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::fiber_diffraction::FiberDiffractionEnergyDensCreator > core::init::FiberDiffractionEnergyDensCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::FreeDOF_EnergyCreator > core::init::FreeDOF_EnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::custom_pair_distance::FullatomCustomPairDistanceEnergyCreator > core::init::FullatomCustomPairDistanceEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::disulfides::FullatomDisulfideEnergyCreator > core::init::FullatomDisulfideEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::GaussianOverlapEnergyCreator > core::init::GaussianOverlapEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::GenBornEnergyCreator > core::init::GenBornEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::GenericBondedEnergyCreator > core::init::GenericBondedEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::GoapEnergyCreator > core::init::GoapEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::hackaro::HackAroEnergyCreator > core::init::HackAroEnergyCreator_registrator
static
EnergyMethodRegistrator< pack::guidance_scoreterms::hbnet_energy::HBNetEnergyCreator > core::init::HBNetEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::hbonds::HBondEnergyCreator > core::init::HBondEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::packing::HolesEnergyCreator > core::init::HolesEnergyCreator_registrator
static
EnergyMethodRegistrator< pack::interaction_graph::HPatchEnergyCreator > core::init::HPatchEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::HRF_MSLabelingEnergyCreator > core::init::HRF_MSLabelingEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::HRFDynamicsEnergyCreator > core::init::HRFDynamicsEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::HybridVDW_EnergyCreator > core::init::HybridVDW_EnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::HydroxylTorsionEnergyCreator > core::init::HydroxylTorsionEnergyCreator_registrator
static
TaskOperationRegistrator< IncludeCurrentCreator > core::init::IncludeCurrentCreator_registrator
static
ResLvlTaskOperationRegistrator< IncludeCurrentRLTCreator > core::init::IncludeCurrentRLTCreator_registrator
static
TaskOperationRegistrator< InitializeExtraRotsFromCommandlineCreator > core::init::InitializeExtraRotsFromCommandlineCreator_registrator
static
TaskOperationRegistrator< InitializeFromCommandlineCreator > core::init::InitializeFromCommandlineCreator_registrator
static
TaskOperationRegistrator< InitializeFromOptionCollectionCreator > core::init::InitializeFromOptionCollectionCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::IntermolEnergyCreator > core::init::IntermolEnergyCreator_registrator
static
TaskOperationRegistrator< KeepSequenceSymmetryCreator > core::init::KeepSequenceSymmetryCreator_registrator
static
ConstraintRegistrator< core::scoring::constraints::KofNConstraintCreator > core::init::KofNConstraintCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::LinearBranchEnergyCreator > core::init::LinearBranchEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::LinearChainbreakEnergyCreator > core::init::LinearChainbreakEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::lkball::LK_BallEnergyCreator > core::init::LK_BallEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::LK_hackCreator > core::init::LK_hackCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::LK_PolarNonPolarEnergyCreator > core::init::LK_PolarNonPolarEnergyCreator_registrator
static
ConstraintRegistrator< core::scoring::constraints::LocalCoordinateConstraintCreator > core::init::LocalCoordinateConstraintCreator_registrator
static
EnergyMethodRegistrator< scoring::loop_graph::LoopCloseEnergyCreator > core::init::LoopCloseEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::MembraneCbetaEnergyCreator > core::init::MembraneCbetaEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::MembraneCenPairEnergyCreator > core::init::MembraneCenPairEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::MembraneEnvEnergyCreator > core::init::MembraneEnvEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::MembraneEnvPenaltiesCreator > core::init::MembraneEnvPenaltiesCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::MembraneEnvSmoothEnergyCreator > core::init::MembraneEnvSmoothEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::MembraneLipoCreator > core::init::MembraneLipoCreator_registrator
static
EnergyMethodRegistrator< scoring::magnesium::MgEnergyCreator > core::init::MgEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::mhc_epitope_energy::MHCEpitopeEnergyCreator > core::init::MHCEpitopeEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::MissingEnergyCreator > core::init::MissingEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::MMBondAngleEnergyCreator > core::init::MMBondAngleEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::MMBondLengthEnergyCreator > core::init::MMBondLengthEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::MMLJEnergyInterCreator > core::init::MMLJEnergyInterCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::MMLJEnergyIntraCreator > core::init::MMLJEnergyIntraCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::MMTorsionEnergyCreator > core::init::MMTorsionEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::MotifDockEnergyCreator > core::init::MotifDockEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::membrane::MPCbetaEnergyCreator > core::init::MPCbetaEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::membrane::MPEnvEnergyCreator > core::init::MPEnvEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::membrane::MPHelicalityEnergyCreator > core::init::MPHelicalityEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::membrane::MPNonHelixPenaltyCreator > core::init::MPNonHelixPenaltyCreator_registrator
static
EnergyMethodRegistrator< scoring::membrane::MPPairEnergyCreator > core::init::MPPairEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::membrane::MPResidueLipophilicityEnergyCreator > core::init::MPResidueLipophilicityEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::membrane::MPSpanAngleEnergyCreator > core::init::MPSpanAngleEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::membrane::MPSpanInsertionEnergyCreator > core::init::MPSpanInsertionEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::membrane::MPTerminiPenaltyCreator > core::init::MPTerminiPenaltyCreator_registrator
static
EnergyMethodRegistrator< scoring::membrane::MPTMProjPenaltyCreator > core::init::MPTMProjPenaltyCreator_registrator
static
ConstraintRegistrator< core::scoring::constraints::MultiConstraintCreator > core::init::MultiConstraintCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::MultipoleElecEnergyCreator > core::init::MultipoleElecEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::chemical_shift::RNA_ChemicalShiftEnergyCreator > core::init::NA_ChemicalShiftEnergyCreator_registrator
static
ConstraintRegistrator< core::scoring::constraints::NamedAngleConstraintCreator > core::init::NamedAngleConstraintCreator_registrator
static
RotamerLibrarySpecificationRegistrator< chemical::rotamers::NCAARotamerLibrarySpecificationCreator > core::init::NCAARotamerLibrarySpecificationCreator_registrator
static
EnergyMethodRegistrator< scoring::netcharge_energy::NetChargeEnergyCreator > core::init::NetChargeEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::NMerPSSMEnergyCreator > core::init::NMerPSSMEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::NMerRefEnergyCreator > core::init::NMerRefEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::NMerSVMEnergyCreator > core::init::NMerSVMEnergyCreator_registrator
static
TaskOperationRegistrator< NoRepackDisulfidesCreator > core::init::NoRepackDisulfidesCreator_registrator
static
ResFilterRegistrator< NoResFilterCreator > core::init::NoResFilterCreator_registrator
static
EnergyMethodRegistrator< scoring::hbonds::NPDHBondEnergyCreator > core::init::NPDHBondEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::nv::NVscoreCreator > core::init::NVscoreCreator_registrator
static
EnergyMethodRegistrator< scoring::geometric_solvation::OccludedHbondSolEnergy_onebodyCreator > core::init::OccludedHbondSolEnergy_onebodyCreator_registrator
static
EnergyMethodRegistrator< scoring::geometric_solvation::OccludedHbondSolEnergyCreator > core::init::OccludedHbondSolEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::OmegaTetherEnergyCreator > core::init::OmegaTetherEnergyCreator_registrator
static
TaskOperationRegistrator< OperateOnCertainResiduesCreator > core::init::OperateOnCertainResiduesCreator_registrator
static
TaskOperationRegistrator< OperateOnResidueSubsetCreator > core::init::OperateOnResidueSubsetCreator_registrator
static
TaskOperationRegistrator< OptCysHGCreator > core::init::OptCysHGCreator_registrator
static
TaskOperationRegistrator< OptHCreator > core::init::OptHCreator_registrator
static
EnergyMethodRegistrator< scoring::orbitals::OrbitalsScoreCreator > core::init::OrbitalsScoreCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::OtherPoseEnergyCreator > core::init::OtherPoseEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::P_AA_EnergyCreator > core::init::P_AA_EnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::P_AA_pp_EnergyCreator > core::init::P_AA_pp_EnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::P_AA_ss_EnergyCreator > core::init::P_AA_ss_EnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::PackStatEnergyCreator > core::init::PackStatEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::PairEnergyCreator > core::init::PairEnergyCreator_registrator
static
RotamerLibrarySpecificationRegistrator< chemical::rotamers::PDBRotamerLibrarySpecificationCreator > core::init::PDBRotamerLibrarySpecificationCreator_registrator
static
SilentStructRegistrator< core::import_pose::PDBSilentStructCreator > core::init::PDBSilentStructCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::PeptideBondEnergyCreator > core::init::PeptideBondEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::pHEnergyCreator > core::init::pHEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::PointWaterEnergyCreator > core::init::PointWaterEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::PoissonBoltzmannEnergyCreator > core::init::PoissonBoltzmannEnergyCreator_registrator
static
ResourceLoaderRegistrator< core::import_pose::PoseResourceLoaderCreator > core::init::PoseResourceLoaderCreator_registrator
static
TaskOperationRegistrator< PreserveCBetaCreator > core::init::PreserveCBetaCreator_registrator
static
ResLvlTaskOperationRegistrator< PreserveCBetaRLTCreator > core::init::PreserveCBetaRLTCreator_registrator
static
TaskOperationRegistrator< PreventRepackingCreator > core::init::PreventRepackingCreator_registrator
static
ResLvlTaskOperationRegistrator< PreventRepackingRLTCreator > core::init::PreventRepackingRLTCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::ProClosureEnergyCreator > core::init::ProClosureEnergyCreator_registrator
static
TaskOperationRegistrator< ProhibitResiduePropertiesCreator > core::init::ProhibitResiduePropertiesCreator_registrator
static
TaskOperationRegistrator< ProhibitSpecifiedBaseResidueTypesCreator > core::init::ProhibitSpecifiedBaseResidueTypesCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::ProQ_EnergyCreator > core::init::ProQ_EnergyCreator_registrator
static
SilentStructRegistrator< core::io::silent::ProteinSilentStruct_SinglePrecCreator > core::init::ProteinSilentStruct_SinglePrecCreator_registrator
static
SilentStructRegistrator< core::io::silent::ProteinSilentStructCreator > core::init::ProteinSilentStructCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::RamachandranEnergy2BCreator > core::init::RamachandranEnergy2BCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::RamachandranEnergyCreator > core::init::RamachandranEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::RamaPreProEnergyCreator > core::init::RamaPreProEnergyCreator_registrator
static
TaskOperationRegistrator< ReadResfileAndObeyLengthEventsCreator > core::init::ReadResfileAndObeyLengthEventsCreator_registrator
static
TaskOperationRegistrator< ReadResfileCreator > core::init::ReadResfileCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::ReferenceEnergyCreator > core::init::ReferenceEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::ReferenceEnergyNoncanonicalCreator > core::init::ReferenceEnergyNoncanonicalCreator_registrator
static
JumpSelectorRegistrator< AndJumpSelectorCreator > core::init::reg_AndJumpSelectorCreator
static
ResidueSelectorRegistrator< AndResidueSelectorCreator > core::init::reg_AndResidueSelectorCreator
static
ResidueSelectorRegistrator< AsymmetricUnitSelectorCreator > core::init::reg_AsymmetricUnitSelectorCreator
static
ResidueSelectorRegistrator< BinSelectorCreator > core::init::reg_BinSelectorCreator
static
ResidueSelectorRegistrator< BondedResidueSelectorCreator > core::init::reg_BondedResidueSelectorCreator
static
ResidueSelectorRegistrator< ChainSelectorCreator > core::init::reg_ChainSelectorCreator
static
ResidueSelectorRegistrator< CloseContactResidueSelectorCreator > core::init::reg_CloseContactResidueSelectorCreator
static
PackerPaletteRegistrator< CustomBaseTypePackerPaletteCreator > core::init::reg_CustomBaseTypePackerPaletteCreator
static
PackerPaletteRegistrator< DefaultPackerPaletteCreator > core::init::reg_DefaultPackerPaletteCreator
static
ResidueSelectorRegistrator< DensityFitResidueSelectorCreator > core::init::reg_DensityFitResidueSelectorCreator
static
ResidueSelectorRegistrator< FalseResidueSelectorCreator > core::init::reg_FalseResidueSelectorCreator
static
ResidueSelectorRegistrator< GlycanLayerSelectorCreator > core::init::reg_GlycanLayerSelectorCreator
static
ResidueSelectorRegistrator< GlycanResidueSelectorCreator > core::init::reg_GlycanResidueSelectorCreator
static
ResidueSelectorRegistrator< GlycanSequonsSelectorCreator > core::init::reg_GlycanSequonsSelectorCreator
static
JumpSelectorRegistrator< InterchainJumpSelectorCreator > core::init::reg_InterchainJumpSelectorCreator
static
ResidueSelectorRegistrator< InterGroupInterfaceByVectorSelectorCreator > core::init::reg_InterGroupInterfaceByVectorSelectorCreator
static
ResidueSelectorRegistrator< JumpDownstreamSelectorCreator > core::init::reg_JumpDownstreamSelectorCreator
static
JumpSelectorRegistrator< JumpIndexSelectorCreator > core::init::reg_JumpIndexSelectorCreator
static
ResidueSelectorRegistrator< JumpUpstreamSelectorCreator > core::init::reg_JumpUpstreamSelectorCreator
static
ResidueSelectorRegistrator< LayerSelectorCreator > core::init::reg_LayerSelectorCreator
static
ResidueSelectorRegistrator< NeighborhoodResidueSelectorCreator > core::init::reg_NeighborhoodResidueSelectorCreator
static
PackerPaletteRegistrator< NoDesignPackerPaletteCreator > core::init::reg_NoDesignPackerPaletteCreator
static
JumpSelectorRegistrator< NotJumpSelectorCreator > core::init::reg_NotJumpSelectorCreator
static
ResidueSelectorRegistrator< NotResidueSelectorCreator > core::init::reg_NotResidueSelectorCreator
static
ResidueSelectorRegistrator< NumNeighborsSelectorCreator > core::init::reg_NumNeighborsSelectorCreator
static
JumpSelectorRegistrator< OrJumpSelectorCreator > core::init::reg_OrJumpSelectorCreator
static
ResidueSelectorRegistrator< OrResidueSelectorCreator > core::init::reg_OrResidueSelectorCreator
static
ResidueSelectorRegistrator< PhiSelectorCreator > core::init::reg_PhiSelectorCreator
static
ResidueSelectorRegistrator< PrimarySequenceNeighborhoodSelectorCreator > core::init::reg_PrimarySequenceNeighborhoodSelectorCreator
static
ResidueSelectorRegistrator< RandomGlycanFoliageSelectorCreator > core::init::reg_RandomGlycanFoliageSelectorCreator
static
ResidueSelectorRegistrator< RandomResidueSelectorCreator > core::init::reg_RandomResidueSelectorCreator
static
ResidueSelectorRegistrator< ResidueIndexSelectorCreator > core::init::reg_ResidueIndexSelectorCreator
static
ResidueSelectorRegistrator< ResidueInMembraneSelectorCreator > core::init::reg_ResidueInMembraneSelectorCreator
static
ResidueSelectorRegistrator< ResidueInSequenceMotifSelectorCreator > core::init::reg_ResidueInSequenceMotifSelectorCreator
static
ResidueSelectorRegistrator< ResidueNameSelectorCreator > core::init::reg_ResidueNameSelectorCreator
static
ResidueSelectorRegistrator< ResiduePDBInfoHasLabelSelectorCreator > core::init::reg_ResiduePDBInfoHasLabelSelectorCreator
static
ResidueSelectorRegistrator< ResiduePropertySelectorCreator > core::init::reg_ResiduePropertySelectorCreator
static
ResidueSelectorRegistrator< ResidueSpanSelectorCreator > core::init::reg_ResidueSpanSelectorCreator
static
ResidueSelectorRegistrator< ScoreTermValueBasedSelectorCreator > core::init::reg_ScoreTermValueBasedSelectorCreator
static
ResidueSelectorRegistrator< SecondaryStructureSelectorCreator > core::init::reg_SecondaryStructureSelectorCreator
static
ResidueSelectorRegistrator< SliceResidueSelectorCreator > core::init::reg_SliceResidueSelectorCreator
static
ResidueSelectorRegistrator< SSElementSelectorCreator > core::init::reg_SSElementSelectorCreator
static
ResidueSelectorRegistrator< SymmetricalResidueSelectorCreator > core::init::reg_SymmetricalResidueSelectorCreator
static
ResidueSelectorRegistrator< TrueResidueSelectorCreator > core::init::reg_TrueResidueSelectorCreator
static
EnergyMethodRegistrator< scoring::methods::ResidualDipolarCouplingEnergy_RohlCreator > core::init::ResidualDipolarCouplingEnergy_RohlCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::ResidualDipolarCouplingEnergyCreator > core::init::ResidualDipolarCouplingEnergyCreator_registrator
static
ResFilterRegistrator< ResidueHasPropertyCreator > core::init::ResidueHasPropertyCreator_registrator
static
ResFilterRegistrator< ResidueIndexIsCreator > core::init::ResidueIndexIsCreator_registrator
static
ResFilterRegistrator< ResidueIndexIsntCreator > core::init::ResidueIndexIsntCreator_registrator
static
ResFilterRegistrator< ResidueLacksPropertyCreator > core::init::ResidueLacksPropertyCreator_registrator
static
ResFilterRegistrator< ResidueName3IsCreator > core::init::ResidueName3IsCreator_registrator
static
ResFilterRegistrator< ResidueName3IsntCreator > core::init::ResidueName3IsntCreator_registrator
static
ResFilterRegistrator< ResiduePDBInfoHasLabelCreator > core::init::ResiduePDBInfoHasLabelCreator_registrator
static
ResFilterRegistrator< ResidueTypeFilterCreator > core::init::ResidueTypeResFilterCreator_registrator
static
pre_talaris_2013_behavior_settings const core::init::restore_sc12_settings
TaskOperationRegistrator< RestrictAbsentCanonicalAASCreator > core::init::RestrictAbsentCanonicalAASCreator_registrator
static
ResLvlTaskOperationRegistrator< RestrictAbsentCanonicalAASExceptNativeRLTCreator > core::init::RestrictAbsentCanonicalAASExceptNativeRLTCreator_registrator
static
ResLvlTaskOperationRegistrator< RestrictAbsentCanonicalAASRLTCreator > core::init::RestrictAbsentCanonicalAASRLTCreator_registrator
static
TaskOperationRegistrator< RestrictInteractionGraphThreadsOperationCreator > core::init::RestrictInteractionGraphThreadsOperationCreator_registrator
static
TaskOperationRegistrator< RestrictResidueToRepackingCreator > core::init::RestrictResidueToRepackingCreator_registrator
static
TaskOperationRegistrator< RestrictToRepackingCreator > core::init::RestrictToRepackingCreator_registrator
static
ResLvlTaskOperationRegistrator< RestrictToRepackingRLTCreator > core::init::RestrictToRepackingRLTCreator_registrator
static
TaskOperationRegistrator< RestrictToResiduePropertiesCreator > core::init::RestrictToResiduePropertiesCreator_registrator
static
TaskOperationRegistrator< RestrictToSpecifiedBaseResidueTypesCreator > core::init::RestrictToSpecifiedBaseResidueTypesCreator_registrator
static
TaskOperationRegistrator< RestrictYSDesignCreator > core::init::RestrictYSDesignCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::RG_Energy_FastCreator > core::init::RG_Energy_FastCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::RG_Energy_RNACreator > core::init::RG_Energy_RNACreator_registrator
static
EnergyMethodRegistrator< scoring::methods::RG_LocalEnergyCreator > core::init::RG_LocalEnergyCreator_registrator
static
SilentStructRegistrator< core::io::silent::RigidBodySilentStructCreator > core::init::RigidBodySilentStructCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::RingClosureEnergyCreator > core::init::RingClosureEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::RMS_EnergyCreator > core::init::RMS_EnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::RNA_BulgeEnergyCreator > core::init::RNA_BulgeEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::data::RNA_ChemicalMappingEnergyCreator > core::init::RNA_ChemicalMappingEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::data::RNA_DataBackboneEnergyCreator > core::init::RNA_DataBackboneEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::elec::RNA_FA_ElecEnergyCreator > core::init::RNA_FA_ElecEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::RNA_FullAtomStackingEnergyCreator > core::init::RNA_FullAtomStackingEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::RNA_FullAtomVDW_BasePhosphateCreator > core::init::RNA_FullAtomVDW_BasePhosphateCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::RNA_JR_SuiteEnergyCreator > core::init::RNA_JR_SuiteEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::RNA_LJ_BaseEnergyCreator > core::init::RNA_LJ_BaseEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::magnesium::RNA_MgPointEnergyCreator > core::init::RNA_MgPointEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::RNA_PairwiseLowResolutionEnergyCreator > core::init::RNA_PairwiseLowResolutionEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::RNA_PartitionEnergyCreator > core::init::RNA_PartitionEnergyCreator_registrator
static
SilentStructRegistrator< core::io::silent::RNA_SilentStructCreator > core::init::RNA_SilentStructCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::RNA_StubCoordinateEnergyCreator > core::init::RNA_StubCoordinateEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::RNA_SugarCloseEnergyCreator > core::init::RNA_SugarCloseEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::RNA_SuiteEnergyCreator > core::init::RNA_SuiteEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::RNA_TorsionEnergyCreator > core::init::RNA_TorsionEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::RNA_VDW_EnergyCreator > core::init::RNA_VDW_EnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::RNP_LowResEnergyCreator > core::init::RNP_LowResEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::RNP_LowResPairDistEnergyCreator > core::init::RNP_LowResPairDistEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::RNP_LowResStackEnergyCreator > core::init::RNP_LowResStackEnergyCreator_registrator
static
TaskOperationRegistrator< RotamerExplosionCreator > core::init::RotamerExplosionCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::SA_EnergyCreator > core::init::SA_EnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::SASAEnergyCreator > core::init::SASAEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::saxs::SAXSEnergyCreator > core::init::SAXSEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::saxs::SAXSEnergyCreatorCEN > core::init::SAXSEnergyCreatorCEN_registrator
static
EnergyMethodRegistrator< scoring::saxs::SAXSEnergyCreatorFA > core::init::SAXSEnergyCreatorFA_registrator
static
SilentStructRegistrator< core::io::silent::ScoreFileSilentStructCreator > core::init::ScoreFileSilentStructCreator_registrator
static
SilentStructRegistrator< core::io::silent::ScoreJumpFileSilentStructCreator > core::init::ScoreJumpFileSilentStructCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::SecondaryStructureEnergyCreator > core::init::SecondaryStructureEnergyCreator_registrator
static
SequenceRegistrator< core::sequence::SequenceCouplingCreator > core::init::SequenceCouplingCreator_registrator
static
ConstraintRegistrator< core::scoring::constraints::SequenceProfileConstraintCreator > core::init::SequenceProfileConstraintCreator_registrator
static
SequenceRegistrator< core::sequence::SequenceProfileCreator > core::init::SequenceProfileCreator_registrator
static
TaskOperationRegistrator< SetRotamerCouplingsCreator > core::init::SetRotamerCouplingsCreator_registrator
static
TaskOperationRegistrator< SetRotamerLinksCreator > core::init::SetRotamerLinksCreator_registrator
static
SequenceRegistrator< core::sequence::SimpleSequenceCreator > core::init::SimpleSequenceCreator_registrator
static
SingleResidueRotamerLibraryRegistrator< pack::rotamers::SingleBasicRotamerLibraryCreator > core::init::SingleBasicRotamerLibraryCreator_registrator
static
SingleResidueRotamerLibraryRegistrator< pack::dunbrack::cenrot::SingleResidueCenrotLibraryCreator > core::init::SingleCenrotRotamerLibraryCreator_registrator
static
SingleResidueRotamerLibraryRegistrator< pack::rotamers::SingleLigandRotamerLibraryCreator > core::init::SingleLigandRotamerLibraryCreator_registrator
static
SingleResidueRotamerLibraryRegistrator< pack::rotamers::SingleNCAARotamerLibraryCreator > core::init::SingleNCAARotamerLibraryCreator_registrator
static
SingleResidueRotamerLibraryRegistrator< pack::dunbrack::SingleResidueDunbrackLibraryCreator > core::init::SingleResidueDunbrackLibraryCreator_registrator
static
ConstraintRegistrator< core::scoring::constraints::SiteConstraintCreator > core::init::SiteConstraintCreator_registrator
static
ConstraintRegistrator< core::scoring::constraints::SiteConstraintResiduesCreator > core::init::SiteConstraintResiduesCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::SmoothCenPairEnergyCreator > core::init::SmoothCenPairEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::SmoothEnvEnergyCreator > core::init::SmoothEnvEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::SplitUnfoldedTwoBodyEnergyCreator > core::init::SplitUnfoldedTwoBodyEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::SSElementMotifContactEnergyCreator > core::init::SSElementMotifContactEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::StackElecEnergyCreator > core::init::StackElecEnergyCreator_registrator
static
SingleResidueRotamerLibraryRegistrator< pack::rotamers::StoredRotamerLibraryCreator > core::init::StoredRotamerLibraryCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::SuckerEnergyCreator > core::init::SuckerEnergyCreator_registrator
static
EnergyMethodRegistrator< carbohydrates::SugarBackboneEnergyCreator > core::init::SugarBackboneEnergyCreator_registrator
static
EnergyMethodRegistrator< pack::interaction_graph::SurfaceEnergyCreator > core::init::SurfaceEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::packing::SurfEnergyCreator > core::init::SurfEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::packing::SurfVolEnergyCreator > core::init::SurfVolEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::sym_e::symECreator > core::init::symECreator_registrator
static
ResourceLoaderRegistrator< core::conformation::symmetry::SymmDataLoaderCreator > core::init::SymmDataLoaderCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::SymmetricLigandEnergyCreator > core::init::SymmetricLigandEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::rna::TNA_SuiteEnergyCreator > core::init::TNA_SuiteEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::UnfoldedStateEnergyCreator > core::init::UnfoldedStateEnergyCreator_registrator
static
TaskOperationRegistrator< UseMultiCoolAnnealerCreator > core::init::UseMultiCoolAnnealerCreator_registrator
static
EnergyMethodRegistrator< scoring::vdwaals::VDW_EnergyCreator > core::init::VDW_EnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::VdWTinkerEnergyCreator > core::init::VdWTinkerEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::WaterAdductHBondEnergyCreator > core::init::WaterAdductHBondEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::WaterAdductIntraEnergyCreator > core::init::WaterAdductIntraEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::WaterSpecificEnergyCreator > core::init::WaterSpecificEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::cryst::XtalMLEnergyCreator > core::init::XtalMLEnergyCreator_registrator
static
EnergyMethodRegistrator< scoring::methods::YHHPlanarityEnergyCreator > core::init::YYHPlanarityEnergyCreator_registrator
static