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protocols::features::ScoreFunctionFeatures Class Reference

#include <ScoreFunctionFeatures.hh>

Inheritance diagram for protocols::features::ScoreFunctionFeatures:
Inheritance graph
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Public Member Functions

 ScoreFunctionFeatures ()
 
 ScoreFunctionFeatures (core::scoring::ScoreFunctionOP scfxn, std::string const &scfxn_name)
 
void write_schema_to_db (utility::sql_database::sessionOP db_session) const override
 generate the table schemas and write them to the database More...
 
utility::vector1< std::string > features_reporter_dependencies () const override
 return the set of features reporters that are required to also already be extracted by the time this one is used. More...
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
 
core::Size report_features (core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, StructureID struct_id, utility::sql_database::sessionOP db_session) override
 collect all the feature data for the pose More...
 
void delete_record (StructureID struct_id, utility::sql_database::sessionOP db_session) override
 
void insert_score_function_weights_rows (core::Size batch_id, utility::sql_database::sessionOP db_session) const
 
std::string type_name () const override
 
- Public Member Functions inherited from protocols::features::FeaturesReporter
 FeaturesReporter ()
 
 ~FeaturesReporter () override
 Automatically generated virtual destructor for class deriving directly from VirtualBase. More...
 
virtual std::string schema () const
 return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...
 
core::Size report_features (core::pose::Pose const &, StructureID, utility::sql_database::sessionOP)
 collect all the feature data for the pose. More...
 
virtual void load_into_pose (utility::sql_database::sessionOP, StructureID, core::pose::Pose &)
 
void set_relevant_residues_mode (RelevantResiduesMode::T setting)
 
RelevantResiduesMode::T get_relevant_residues_mode () const
 
bool check_relevant_residues (utility::vector1< bool > const &relevant_residues, core::Size res1) const
 
bool check_relevant_residues (utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const
 
bool check_relevant_residues_range (utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const
 
bool check_relevant_residues (utility::vector1< bool > const &relevant_residues, utility::vector1< core::Size > const &residues) const
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Private Member Functions

void write_score_function_weights_table_schema (utility::sql_database::sessionOP db_session) const
 generate the score_function_weights table schema More...
 

Private Attributes

core::scoring::ScoreFunctionOP scfxn_
 
std::string scfxn_name_
 

Additional Inherited Members

- Protected Member Functions inherited from protocols::features::FeaturesReporter
std::string find_tag (core::pose::Pose const &pose) const
 
void delete_records_from_table (std::string const &table_name, StructureID struct_id, utility::sql_database::sessionOP db_session)
 a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...
 
- Protected Attributes inherited from protocols::features::FeaturesReporter
RelevantResiduesMode::T relevant_residues_mode_
 

Constructor & Destructor Documentation

protocols::features::ScoreFunctionFeatures::ScoreFunctionFeatures ( )
protocols::features::ScoreFunctionFeatures::ScoreFunctionFeatures ( core::scoring::ScoreFunctionOP  scfxn,
std::string const &  scfxn_name 
)

References scfxn_.

Member Function Documentation

std::string protocols::features::ScoreFunctionFeatures::class_name ( )
static
void protocols::features::ScoreFunctionFeatures::delete_record ( StructureID  struct_id,
utility::sql_database::sessionOP  db_session 
)
overridevirtual
vector1< string > protocols::features::ScoreFunctionFeatures::features_reporter_dependencies ( ) const
overridevirtual

return the set of features reporters that are required to also already be extracted by the time this one is used.

Reimplemented from protocols::features::FeaturesReporter.

void protocols::features::ScoreFunctionFeatures::insert_score_function_weights_rows ( core::Size  batch_id,
utility::sql_database::sessionOP  db_session 
) const
void protocols::features::ScoreFunctionFeatures::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap &  data 
)
overridevirtual

Reimplemented from protocols::features::FeaturesReporter.

References scfxn_, and scfxn_name_.

void protocols::features::ScoreFunctionFeatures::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
Size protocols::features::ScoreFunctionFeatures::report_features ( core::pose::Pose const &  pose,
utility::vector1< bool > const &  relevant_residues,
StructureID  struct_id,
utility::sql_database::sessionOP  db_session 
)
overridevirtual
std::string protocols::features::ScoreFunctionFeatures::type_name ( ) const
overridevirtual

Reimplemented from protocols::features::FeaturesReporter.

References class_name().

void protocols::features::ScoreFunctionFeatures::write_schema_to_db ( utility::sql_database::sessionOP  db_session) const
overridevirtual
void protocols::features::ScoreFunctionFeatures::write_score_function_weights_table_schema ( utility::sql_database::sessionOP  db_session) const
private

generate the score_function_weights table schema

Referenced by write_schema_to_db().

Member Data Documentation

core::scoring::ScoreFunctionOP protocols::features::ScoreFunctionFeatures::scfxn_
private
std::string protocols::features::ScoreFunctionFeatures::scfxn_name_
private

The documentation for this class was generated from the following files: