Rosetta  2021.16
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protocols::helical_bundle_predict::HBPHelixAssignments Member List

This is the complete list of members for protocols::helical_bundle_predict::HBPHelixAssignments, including all inherited members.

::HBPHelixAssignmentsTests classprotocols::helical_bundle_predict::HBPHelixAssignmentsfriend
add_helix()protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
add_helix(core::Size const startpos, core::Size const endpos, HBPHelix const &reference_helix)protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
check_for_helix_merges(HBPHelixCOP const current_helix=nullptr)protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
clear()protocols::helical_bundle_predict::HBPHelixAssignments
clone() const protocols::helical_bundle_predict::HBPHelixAssignments
common_delta_omega1_protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
common_omega0_protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
common_r0_protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
confine_to_user_defined_helices() const protocols::helical_bundle_predict::HBPHelixAssignmentsinline
confine_to_user_defined_helices_protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
extension_prob_protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
find_adjacent_helix(core::Size seqpos)protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
generate_torsion_values_for_helices(utility::vector1< std::map< core::id::TorsionID, core::Real > > &torsion_values_out, core::pose::Pose const &pose_for_reference) const protocols::helical_bundle_predict::HBPHelixAssignments
get_containing_helix_index(core::Size const seqpos) const protocols::helical_bundle_predict::HBPHelixAssignments
global_bundle_calculator_protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
global_crick_params_file_protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
global_delta_omega1_max_protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
global_delta_omega1_min_protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
global_fractional_perturbation_magnitude_protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
global_omega0_max_protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
global_omega0_min_protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
global_perturbation_prob_protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
global_r0_max_protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
global_r0_min_protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
HBPHelixAssignments()protocols::helical_bundle_predict::HBPHelixAssignments
HBPHelixAssignments(HBPHelixAssignments const &src)protocols::helical_bundle_predict::HBPHelixAssignments
helices_protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
helix_from_seqpos(core::Size const position)protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
helix_from_seqpos(core::Size const position) const protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
helix_types_match(HBPHelix const &first_helix, HBPHelix const &second_helix) const protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
initialize_from_file_contents(std::string const &file_contents)protocols::helical_bundle_predict::HBPHelixAssignments
initialize_global_options_from_file_contents(std::string const &file_contents)protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
initialize_helices_from_file_contents(std::string const &file_contents)protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
is_in_helix(core::Size const sequence_index) const protocols::helical_bundle_predict::HBPHelixAssignments
merge_helices(core::Size const first_helix_index, core::Size const second_helix_index, HBPHelixCOP const current_helix=nullptr)protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
nucleation_prob_protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
operator=(HBPHelixAssignments const &src)protocols::helical_bundle_predict::HBPHelixAssignments
pull_out_global_block(std::string const &file_contents, std::string &global_block) const protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
pull_out_helix_blocks(std::string const &file_contents, utility::vector1< std::string > &helix_blocks) const protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
remove_helix(HBPHelixOP helix_to_remove)protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
resolve_mismatching_helix_overlap(core::Size const helix1_index, core::Size const helix2_index)protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
retraction_prob_protocols::helical_bundle_predict::HBPHelixAssignmentsprivate
try_elongating_helix(core::Size const seqpos, core::pose::Pose const &pose, HBPHelixAssignments const &reference_helix_assignments)protocols::helical_bundle_predict::HBPHelixAssignments
try_nucleating_helix(core::Size const seqpos, core::pose::Pose const &pose, HBPHelixAssignments const &reference_helix_assignments)protocols::helical_bundle_predict::HBPHelixAssignments
try_perturbing_global_helix_parameters()protocols::helical_bundle_predict::HBPHelixAssignments
try_perturbing_local_helix_parameters()protocols::helical_bundle_predict::HBPHelixAssignments
try_retracting_helix(core::Size const seqpos, core::pose::Pose const &pose, HBPHelixAssignments const &reference_helix_assignments)protocols::helical_bundle_predict::HBPHelixAssignments
~HBPHelixAssignments() overrideprotocols::helical_bundle_predict::HBPHelixAssignments