protocols::task_operations::SelectByDeltaScoreOperation Class Reference

#include <SelectByDeltaScoreOperation.hh>

Inheritance diagram for protocols::task_operations::SelectByDeltaScoreOperation:

Public Member Functions
	SelectByDeltaScoreOperation ()
	default constructor More...
	~SelectByDeltaScoreOperation () override
	destructor More...
core::pack::task::operation::TaskOperationOP	clone () const override
	make clone More...
void	apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
void	parse_tag (TagCOP tag, DataMap &) override
	Used to parse an xml-like tag to load parameters and properties. More...
core::scoring::ScoreFunctionOP	scorefxn () const
void	scorefxn (core::scoring::ScoreFunctionOP scorefxn)
core::scoring::ScoreType	score_type () const
void	score_type (core::scoring::ScoreType const st)
std::string	score_type_name () const
void	score_type_name (std::string const &name)
core::Real	threshold () const
void	threshold (core::Real const threshold)
bool	lower () const
void	lower (bool const lower)
core::pose::PoseOP	reference_pose () const
void	reference_pose (core::pose::PoseOP const reference_pose)
bool	individual_hbonds () const
void	individual_hbonds (bool const individual_hbonds)
Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
static std::string	keyname ()

Private Attributes
core::scoring::ScoreFunctionOP	scorefxn_
core::scoring::ScoreType	score_type_
std::string	score_type_name_
core::Real	threshold_
bool	lower_
bool	individual_hbonds_
core::pose::PoseOP	reference_pose_

Additional Inherited Members
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Constructor & Destructor Documentation

SelectByDeltaScoreOperation()

protocols::task_operations::SelectByDeltaScoreOperation::SelectByDeltaScoreOperation

(

)

default constructor

~SelectByDeltaScoreOperation()

protocols::task_operations::SelectByDeltaScoreOperation::~SelectByDeltaScoreOperation ( )

overridedefault

destructor

Member Function Documentation

apply()

void protocols::task_operations::SelectByDeltaScoreOperation::apply ( core::pose::Pose const &  , core::pack::task::PackerTask &    ) const

overridevirtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::TaskOperation.

References core::scoring::hbonds::HBond::acc_atm_is_protein_backbone(), core::scoring::hbonds::HBond::acc_res(), core::pose::Pose::conformation(), core::scoring::hbonds::HBondOptions::decompose_bb_hb_into_pair_energies(), core::scoring::hbonds::HBond::don_hatm_is_protein_backbone(), core::scoring::hbonds::HBond::don_res(), core::pose::Pose::energies(), core::scoring::hbonds::HBond::energy(), core::scoring::hbonds::fill_hbond_set(), core::scoring::hbonds::HBondSet::hbond(), core::scoring::methods::EnergyMethodOptions::hbond_options(), individual_hbonds_, core::conformation::symmetry::is_symmetric(), lower_, core::conformation::Residue::name3(), core::scoring::hbonds::HBondSet::nhbonds(), core::pack::task::PackerTask::nonconst_residue_task(), core::pose::Pose::pdb_info(), core::pack::task::ResidueLevelTask::prevent_repacking(), reference_pose_, core::pose::Pose::residue(), core::scoring::Energies::residue_total_energies(), score_type_, score_type_name_, scorefxn(), core::pose::Pose::size(), core::pose::symmetry::symmetry_info(), threshold_, and protocols::task_operations::TR().

clone()

core::pack::task::operation::TaskOperationOP protocols::task_operations::SelectByDeltaScoreOperation::clone ( ) const

overridevirtual

make clone

Implements core::pack::task::operation::TaskOperation.

individual_hbonds() [1/2]

bool protocols::task_operations::SelectByDeltaScoreOperation::individual_hbonds

(

)

const

References individual_hbonds_.

Referenced by individual_hbonds(), and parse_tag().

individual_hbonds() [2/2]

void protocols::task_operations::SelectByDeltaScoreOperation::individual_hbonds

(

bool const

individual_hbonds

)

References individual_hbonds(), and individual_hbonds_.

keyname()

static std::string protocols::task_operations::SelectByDeltaScoreOperation::keyname ( )

inlinestatic

Referenced by protocols::task_operations::SelectByDeltaScoreOperationCreator::keyname(), and provide_xml_schema().

lower() [1/2]

bool protocols::task_operations::SelectByDeltaScoreOperation::lower

(

)

const

References lower_.

Referenced by lower(), and parse_tag().

lower() [2/2]

void protocols::task_operations::SelectByDeltaScoreOperation::lower

(

bool const

lower

)

References lower(), and lower_.

parse_tag()

void protocols::task_operations::SelectByDeltaScoreOperation::parse_tag ( TagCOP  tag, DataMap &    )

overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References individual_hbonds(), lower(), core::scoring::parse_score_function(), core::import_pose::PDB_file, core::import_pose::pose_from_file(), reference_pose_, protocols::rosetta_scripts::saved_reference_pose(), score_type(), core::scoring::score_type_from_name(), score_type_name(), scorefxn(), and threshold().

provide_xml_schema()

void protocols::task_operations::SelectByDeltaScoreOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References core::scoring::attributes_for_parse_score_function(), keyname(), and core::pack::task::operation::task_op_schema_w_attributes().

Referenced by protocols::task_operations::SelectByDeltaScoreOperationCreator::provide_xml_schema().

reference_pose() [1/2]

core::pose::PoseOP protocols::task_operations::SelectByDeltaScoreOperation::reference_pose

(

)

const

References reference_pose_.

Referenced by reference_pose().

reference_pose() [2/2]

void protocols::task_operations::SelectByDeltaScoreOperation::reference_pose

(

core::pose::PoseOP const

reference_pose

)

References reference_pose(), and reference_pose_.

score_type() [1/2]

core::scoring::ScoreType protocols::task_operations::SelectByDeltaScoreOperation::score_type

(

)

const

References score_type_.

Referenced by parse_tag(), and score_type().

score_type() [2/2]

void protocols::task_operations::SelectByDeltaScoreOperation::score_type

(

core::scoring::ScoreType const

st

)

References score_type(), and score_type_.

score_type_name() [1/2]

std::string protocols::task_operations::SelectByDeltaScoreOperation::score_type_name

(

)

const

References score_type_name_.

Referenced by parse_tag(), and score_type_name().

score_type_name() [2/2]

void protocols::task_operations::SelectByDeltaScoreOperation::score_type_name

(

std::string const &

name

)

References score_type_name(), and score_type_name_.

scorefxn() [1/2]

core::scoring::ScoreFunctionOP protocols::task_operations::SelectByDeltaScoreOperation::scorefxn

(

)

const

References scorefxn_.

Referenced by apply(), parse_tag(), and scorefxn().

scorefxn() [2/2]

void protocols::task_operations::SelectByDeltaScoreOperation::scorefxn

(

core::scoring::ScoreFunctionOP

scorefxn

)

References scorefxn(), and scorefxn_.

threshold() [1/2]

core::Real protocols::task_operations::SelectByDeltaScoreOperation::threshold

(

)

const

References threshold_.

Referenced by parse_tag(), and threshold().

threshold() [2/2]

void protocols::task_operations::SelectByDeltaScoreOperation::threshold

(

core::Real const

threshold

)

References threshold(), and threshold_.

Member Data Documentation

individual_hbonds_

bool protocols::task_operations::SelectByDeltaScoreOperation::individual_hbonds_

private

Referenced by apply(), and individual_hbonds().

lower_

bool protocols::task_operations::SelectByDeltaScoreOperation::lower_

private

Referenced by apply(), and lower().

reference_pose_

core::pose::PoseOP protocols::task_operations::SelectByDeltaScoreOperation::reference_pose_

private

Referenced by apply(), parse_tag(), and reference_pose().

score_type_

core::scoring::ScoreType protocols::task_operations::SelectByDeltaScoreOperation::score_type_

private

Referenced by apply(), and score_type().

score_type_name_

std::string protocols::task_operations::SelectByDeltaScoreOperation::score_type_name_

private

Referenced by apply(), and score_type_name().

scorefxn_

core::scoring::ScoreFunctionOP protocols::task_operations::SelectByDeltaScoreOperation::scorefxn_

private

Referenced by scorefxn().

threshold_

core::Real protocols::task_operations::SelectByDeltaScoreOperation::threshold_

private

Referenced by apply(), and threshold().

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The documentation for this class was generated from the following files:

• src/protocols/task_operations/SelectByDeltaScoreOperation.hh
• src/protocols/task_operations/SelectByDeltaScoreOperation.cc