Rosetta
protocols::cartesian::MolecularDynamics Member List

This is the complete list of members for protocols::cartesian::MolecularDynamics, including all inherited members.

anglelistprotocols::cartesian::MolecularDynamicsprivate
applyForces_BeeMan(float &kin, float &temp)protocols::cartesian::MolecularDynamicsprivate
applyForces_ConjugateGradient(int Step, float &current_energy, float &m_OldEnergy)protocols::cartesian::MolecularDynamicsprivate
applyForces_LangevinIntegration(core::Real T, float &kin, float &temp)protocols::cartesian::MolecularDynamicsprivate
bondlistprotocols::cartesian::MolecularDynamicsprivate
calcKineticEnergy(float &ekin, float &Temp)protocols::cartesian::MolecularDynamicsprivate
cartomprotocols::cartesian::MolecularDynamicsprivate
createAngleList()protocols::cartesian::MolecularDynamicsprivate
createBondList()protocols::cartesian::MolecularDynamicsprivate
createCartesianArray()protocols::cartesian::MolecularDynamicsprivate
createCartesianDerivatives(core::pose::Pose &pose, core::scoring::ScoreFunction const &scorefxn)protocols::cartesian::MolecularDynamicsprivate
createCartesianDerivatives(core::scoring::ScoreFunction const &scorefxn)protocols::cartesian::MolecularDynamicsprivate
createDihedral(const core::conformation::Residue &rsd, std::string const &name1, std::string const &name2, std::string const &name3, std::string const &name4)protocols::cartesian::MolecularDynamicsprivate
createDihedral(const core::conformation::Residue &rsd1, const core::conformation::Residue &rsd2, const core::conformation::Residue &rsd3, const core::conformation::Residue &rsd4, std::string const &name1, std::string const &name2, std::string const &name3, std::string const &name4)protocols::cartesian::MolecularDynamicsprivate
createDihedralList()protocols::cartesian::MolecularDynamicsprivate
dihedrallistprotocols::cartesian::MolecularDynamicsprivate
doAngleDerivatives(float &totalepot)protocols::cartesian::MolecularDynamicsprivate
doBondDerivatives(float &totalepot)protocols::cartesian::MolecularDynamicsprivate
doDihedralDerivatives(float &totalepot)protocols::cartesian::MolecularDynamicsprivate
domain_mapprotocols::cartesian::MolecularDynamicsprivate
doMD(core::scoring::ScoreFunction const &scorefxn, int Steps, float startTemp, float endTemp)protocols::cartesian::MolecularDynamics
doMinimising(core::scoring::ScoreFunction const &scorefxn)protocols::cartesian::MolecularDynamics
findCartomAtom(const core::id::AtomID &id1)protocols::cartesian::MolecularDynamicsprivate
getCartesianDerivatives(core::scoring::ScoreFunction const &scorefxn)protocols::cartesian::MolecularDynamicsprivate
min_mapprotocols::cartesian::MolecularDynamicsprivate
mmprotocols::cartesian::MolecularDynamicsprivate
MolecularDynamics(core::pose::PoseOP &inputpose, core::scoring::ScoreFunction const &scorefxn)protocols::cartesian::MolecularDynamics
poseprotocols::cartesian::MolecularDynamicsprivate
setCartesianPositionsFromPose()protocols::cartesian::MolecularDynamicsprivate
setDihedralDerivatives()protocols::cartesian::MolecularDynamicsprivate
setInitialSpeeds(core::Real tgtTemp)protocols::cartesian::MolecularDynamicsprivate
setPosePositionsFromCartesian()protocols::cartesian::MolecularDynamicsprivate
testCartesianDerivatives(core::scoring::ScoreFunction const &scorefxn)protocols::cartesian::MolecularDynamics
zeroForces()protocols::cartesian::MolecularDynamicsprivate