protocols::stepwise::modeler::packer::StepWiseMasterPacker Class Reference

#include <StepWiseMasterPacker.hh>

Inheritance diagram for protocols::stepwise::modeler::packer::StepWiseMasterPacker:

Public Member Functions
	StepWiseMasterPacker (working_parameters::StepWiseWorkingParametersCOP working_parameters, options::StepWiseModelerOptionsCOP options)
	~StepWiseMasterPacker () override
void	initialize (core::pose::Pose const &pose)
void	add_packer_screeners (utility::vector1< screener::StepWiseScreenerOP > &screeners, core::pose::Pose const &pose, core::pose::PoseOP sugar_instantiation_pose)
void	reset (core::pose::Pose const &pose)
void	do_prepack (core::pose::Pose &pose)
void	set_working_pack_res (utility::vector1< core::Size > const &setting)
utility::vector1< core::Size > const &	working_pack_res () const
void	set_scorefxn (core::scoring::ScoreFunctionCOP scorefxn)
core::scoring::ScoreFunctionCOP	scorefxn () const
packer::StepWisePackerCOP	packer ()

Private Member Functions
void	initialize_packer ()

Private Attributes
working_parameters::StepWiseWorkingParametersCOP	working_parameters_
options::StepWiseModelerOptionsCOP	options_
core::scoring::ScoreFunctionCOP	scorefxn_
core::scoring::ScoreFunctionCOP	phosphate_scorefxn_
utility::vector1< core::Size >	working_pack_res_
core::pose::PoseOP	packer_pose_
packer::StepWisePackerOP	packer_
rna::o2prime::O2PrimePackerOP	o2prime_packer_
rna::phosphate::MultiPhosphateSamplerOP	phosphate_sampler_

Constructor & Destructor Documentation

StepWiseMasterPacker()

protocols::stepwise::modeler::packer::StepWiseMasterPacker::StepWiseMasterPacker	(	working_parameters::StepWiseWorkingParametersCOP	working_parameters,
		options::StepWiseModelerOptionsCOP	options
	)

~StepWiseMasterPacker()

protocols::stepwise::modeler::packer::StepWiseMasterPacker::~StepWiseMasterPacker ( )

overridedefault

Member Function Documentation

add_packer_screeners()

void protocols::stepwise::modeler::packer::StepWiseMasterPacker::add_packer_screeners	(	utility::vector1< screener::StepWiseScreenerOP > &	screeners,
		core::pose::Pose const &	pose,
		core::pose::PoseOP	sugar_instantiation_pose
	)

References core::pose::Pose::clone(), protocols::stepwise::modeler::protein::contains_protein(), o2prime_packer_, options_, packer_, packer_pose_, phosphate_sampler_, and working_parameters_.

do_prepack()

void protocols::stepwise::modeler::packer::StepWiseMasterPacker::do_prepack

(

core::pose::Pose &

pose

)

References packer_, phosphate_sampler_, and working_parameters_.

initialize()

void protocols::stepwise::modeler::packer::StepWiseMasterPacker::initialize

(

core::pose::Pose const &

pose

)

References protocols::stepwise::modeler::rna::check_instantiated_O2Prime_hydrogen(), protocols::stepwise::modeler::rna::phosphate::get_phosphate_scorefxn(), initialize_packer(), o2prime_packer_, options_, phosphate_sampler_, scorefxn_, and working_parameters_.

initialize_packer()

void protocols::stepwise::modeler::packer::StepWiseMasterPacker::initialize_packer ( )

private

References protocols::stepwise::modeler::get_all_working_moving_res(), protocols::stepwise::modeler::packer::get_packer(), options_, packer_, scorefxn_, and working_parameters_.

Referenced by initialize().

packer()

packer::StepWisePackerCOP protocols::stepwise::modeler::packer::StepWiseMasterPacker::packer

(

)

References packer_.

reset()

void protocols::stepwise::modeler::packer::StepWiseMasterPacker::reset

(

core::pose::Pose const &

pose

)

References packer_, and phosphate_sampler_.

scorefxn()

core::scoring::ScoreFunctionCOP protocols::stepwise::modeler::packer::StepWiseMasterPacker::scorefxn ( ) const

inline

References scorefxn_.

Referenced by set_scorefxn().

set_scorefxn()

void protocols::stepwise::modeler::packer::StepWiseMasterPacker::set_scorefxn ( core::scoring::ScoreFunctionCOP  scorefxn )

inline

References scorefxn(), and scorefxn_.

set_working_pack_res()

void protocols::stepwise::modeler::packer::StepWiseMasterPacker::set_working_pack_res

(

utility::vector1< core::Size > const &

setting

)

References packer_, and working_pack_res_.

working_pack_res()

utility::vector1< core::Size > const& protocols::stepwise::modeler::packer::StepWiseMasterPacker::working_pack_res ( ) const

inline

References working_pack_res_.

Member Data Documentation

o2prime_packer_

rna::o2prime::O2PrimePackerOP protocols::stepwise::modeler::packer::StepWiseMasterPacker::o2prime_packer_

private

Referenced by add_packer_screeners(), and initialize().

options_

options::StepWiseModelerOptionsCOP protocols::stepwise::modeler::packer::StepWiseMasterPacker::options_

private

Referenced by add_packer_screeners(), initialize(), and initialize_packer().

packer_

packer::StepWisePackerOP protocols::stepwise::modeler::packer::StepWiseMasterPacker::packer_

private

Referenced by add_packer_screeners(), do_prepack(), initialize_packer(), packer(), reset(), and set_working_pack_res().

packer_pose_

core::pose::PoseOP protocols::stepwise::modeler::packer::StepWiseMasterPacker::packer_pose_

private

Referenced by add_packer_screeners().

phosphate_sampler_

rna::phosphate::MultiPhosphateSamplerOP protocols::stepwise::modeler::packer::StepWiseMasterPacker::phosphate_sampler_

private

Referenced by add_packer_screeners(), do_prepack(), initialize(), and reset().

phosphate_scorefxn_

core::scoring::ScoreFunctionCOP protocols::stepwise::modeler::packer::StepWiseMasterPacker::phosphate_scorefxn_

private

scorefxn_

core::scoring::ScoreFunctionCOP protocols::stepwise::modeler::packer::StepWiseMasterPacker::scorefxn_

private

Referenced by initialize(), initialize_packer(), scorefxn(), and set_scorefxn().

working_pack_res_

utility::vector1< core::Size > protocols::stepwise::modeler::packer::StepWiseMasterPacker::working_pack_res_

private

Referenced by set_working_pack_res(), and working_pack_res().

working_parameters_

working_parameters::StepWiseWorkingParametersCOP protocols::stepwise::modeler::packer::StepWiseMasterPacker::working_parameters_

private

Referenced by add_packer_screeners(), do_prepack(), initialize(), and initialize_packer().

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The documentation for this class was generated from the following files:

• src/protocols/stepwise/modeler/packer/StepWiseMasterPacker.hh
• src/protocols/stepwise/modeler/packer/StepWiseMasterPacker.cc