protocols::enzdes::RemoveLigandFilter Class Reference

#include <RemoveLigandFilter.hh>

Inheritance diagram for protocols::enzdes::RemoveLigandFilter:

Public Types
typedef protocols::filters::Filter	Filter
typedef protocols::filters::FilterOP	FilterOP
typedef protocols::moves::MoverOP	MoverOP
typedef core::pose::Pose	Pose

Public Member Functions
	RemoveLigandFilter ()
	RemoveLigandFilter (core::Real threshold)
	RemoveLigandFilter (RemoveLigandFilter const &rval)
bool	apply (Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...
core::Real	report_sm (Pose const &pose) const override
	used to report filter internals through a score or silent file More...
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
FilterOP	clone () const override
FilterOP	fresh_instance () const override
std::string	name () const override
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	~Filter () override
virtual void	report (std::ostream &, core::pose::Pose const &) const
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
core::Real	threshold_
MoverOP	mover_
FilterOP	filter_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

Filter

typedef protocols::filters::Filter protocols::enzdes::RemoveLigandFilter::Filter

FilterOP

typedef protocols::filters::FilterOP protocols::enzdes::RemoveLigandFilter::FilterOP

MoverOP

typedef protocols::moves::MoverOP protocols::enzdes::RemoveLigandFilter::MoverOP

Pose

typedef core::pose::Pose protocols::enzdes::RemoveLigandFilter::Pose

Constructor & Destructor Documentation

RemoveLigandFilter() [1/3]

protocols::enzdes::RemoveLigandFilter::RemoveLigandFilter

(

)

References core::scoring::get_score_function(), protocols::minimization_packing::MinMover::movemap(), and mover_.

RemoveLigandFilter() [2/3]

protocols::enzdes::RemoveLigandFilter::RemoveLigandFilter

(

core::Real

threshold

)

RemoveLigandFilter() [3/3]

protocols::enzdes::RemoveLigandFilter::RemoveLigandFilter

(

RemoveLigandFilter const &

rval

)

Member Function Documentation

apply()

bool protocols::enzdes::RemoveLigandFilter::apply ( Pose const &  pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References report_sm(), and threshold_.

class_name()

std::string protocols::enzdes::RemoveLigandFilter::class_name ( )

static

Referenced by protocols::enzdes::RemoveLigandFilterCreator::keyname(), name(), and provide_xml_schema().

clone()

FilterOP protocols::enzdes::RemoveLigandFilter::clone ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

fresh_instance()

FilterOP protocols::enzdes::RemoveLigandFilter::fresh_instance ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

name()

std::string protocols::enzdes::RemoveLigandFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

parse_my_tag()

void protocols::enzdes::RemoveLigandFilter::parse_my_tag ( utility::tag::TagCOP  , basic::datacache::DataMap &    )

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References filter_, mover_, protocols::rosetta_scripts::parse_filter(), protocols::rosetta_scripts::parse_mover(), and threshold_.

provide_xml_schema()

void protocols::enzdes::RemoveLigandFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::enzdes::RemoveLigandFilterCreator::provide_xml_schema().

report_sm()

Real protocols::enzdes::RemoveLigandFilter::report_sm ( Pose const &  ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References filter_, mover_, protocols::protein_interface_design::filters::RmsdFilter::reference_pose(), and protocols::toolbox::pose_manipulation::remove_non_protein_residues().

Referenced by apply().

Member Data Documentation

filter_

FilterOP protocols::enzdes::RemoveLigandFilter::filter_

private

Referenced by parse_my_tag(), and report_sm().

mover_

MoverOP protocols::enzdes::RemoveLigandFilter::mover_

private

Referenced by parse_my_tag(), RemoveLigandFilter(), and report_sm().

threshold_

core::Real protocols::enzdes::RemoveLigandFilter::threshold_

private

Referenced by apply(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• src/protocols/enzdes/RemoveLigandFilter.hh
• src/protocols/enzdes/RemoveLigandFilter.cc