protocols::antibody::clusters::CDRClusterSet Class Reference

Class that can determine a CDR Cluster, hold that information, and give it out when asked. More...

#include <CDRClusterSet.hh>

Inheritance diagram for protocols::antibody::clusters::CDRClusterSet:

Public Member Functions
	CDRClusterSet (AntibodyInfo *ab_info)
	Constructor should only be used within AntibodyInfo, as it requires and is part of AbInfo. More...
	~CDRClusterSet () override
void	identify_and_set_cdr_cluster (core::pose::Pose const &pose, CDRNameEnum cdr)
	Identify the cluster of the CDR, using numbering information held in AntibodyInfo. Replace data if already present. More...
void	clear ()
	Clear the held cluster data. More...
void	clear (CDRNameEnum cdr)
	Remove data of CDR using normal numbering. More...
bool	empty () const
bool	empty (CDRNameEnum cdr) const
CDRClusterCOP	get_cluster_data (CDRNameEnum cdr) const
void	set_cluster_data (CDRNameEnum cdr, CDRClusterCOP cluster)
	Manually set the CDR Cluster. More...
CDRClusterEnum	get_cluster (CDRNameEnum cdr) const
BasicCDRClusterSetOP	get_cacheable_cluster_data () const
	Get a new BasicCDRClusterSet with copies of CDRClusters contained in this set. More...
void	set_cacheable_cluster_data_to_pose (core::pose::Pose &pose) const
	Set a new BasicCDRClusterSet to a pose with copies of CDRClusters contained in this set. More...

Private Member Functions
void	calculate_cdr_cluster (CDRNameEnum cdr, core::Size start, core::Size end)

Private Attributes
AntibodyInfo *	ab_info_
CDRClusterMatcherOP	cluster_matcher_
utility::vector1< CDRClusterOP >	clusters_

Detailed Description

Class that can determine a CDR Cluster, hold that information, and give it out when asked.

Constructor & Destructor Documentation

CDRClusterSet()

protocols::antibody::clusters::CDRClusterSet::CDRClusterSet

(

AntibodyInfo *

ab_info

)

Constructor should only be used within AntibodyInfo, as it requires and is part of AbInfo.

~CDRClusterSet()

protocols::antibody::clusters::CDRClusterSet::~CDRClusterSet ( )

overridedefault

Member Function Documentation

calculate_cdr_cluster()

void protocols::antibody::clusters::CDRClusterSet::calculate_cdr_cluster ( CDRNameEnum  cdr, core::Size  start, core::Size  end  )

private

clear() [1/2]

void protocols::antibody::clusters::CDRClusterSet::clear

(

)

Clear the held cluster data.

clear() [2/2]

void protocols::antibody::clusters::CDRClusterSet::clear

(

CDRNameEnum

cdr

)

Remove data of CDR using normal numbering.

empty() [1/2]

bool protocols::antibody::clusters::CDRClusterSet::empty

(

)

const

empty() [2/2]

bool protocols::antibody::clusters::CDRClusterSet::empty

(

CDRNameEnum

cdr

)

const

get_cacheable_cluster_data()

BasicCDRClusterSetOP protocols::antibody::clusters::CDRClusterSet::get_cacheable_cluster_data

(

)

const

Get a new BasicCDRClusterSet with copies of CDRClusters contained in this set.

get_cluster()

CDRClusterEnum protocols::antibody::clusters::CDRClusterSet::get_cluster

(

CDRNameEnum

cdr

)

const

References protocols::antibody::clusters::NA.

get_cluster_data()

CDRClusterCOP protocols::antibody::clusters::CDRClusterSet::get_cluster_data

(

CDRNameEnum

cdr

)

const

identify_and_set_cdr_cluster()

void protocols::antibody::clusters::CDRClusterSet::identify_and_set_cdr_cluster	(	core::pose::Pose const &	pose,
		CDRNameEnum	cdr
	)

Identify the cluster of the CDR, using numbering information held in AntibodyInfo. Replace data if already present.

References core::sequence::end, protocols::antibody::North, and protocols::loops::start.

set_cacheable_cluster_data_to_pose()

void protocols::antibody::clusters::CDRClusterSet::set_cacheable_cluster_data_to_pose

(

core::pose::Pose &

pose

)

const

Set a new BasicCDRClusterSet to a pose with copies of CDRClusters contained in this set.

References core::pose::datacache::CacheableDataType::CDR_CLUSTER_INFO, core::pose::Pose::data(), and protocols::antibody::clusters::TR().

set_cluster_data()

void protocols::antibody::clusters::CDRClusterSet::set_cluster_data	(	CDRNameEnum	cdr,
		CDRClusterCOP	cluster
	)

Manually set the CDR Cluster.

Member Data Documentation

ab_info_

AntibodyInfo* protocols::antibody::clusters::CDRClusterSet::ab_info_

private

cluster_matcher_

CDRClusterMatcherOP protocols::antibody::clusters::CDRClusterSet::cluster_matcher_

private

clusters_

utility::vector1< CDRClusterOP > protocols::antibody::clusters::CDRClusterSet::clusters_

private

---

The documentation for this class was generated from the following files:

• src/protocols/antibody/clusters/CDRClusterSet.hh
• src/protocols/antibody/clusters/CDRClusterSet.cc