Rosetta: protocols::score_filters::GeometryFilter Class Reference

Rosetta

#include <GeometryFilter.hh>

Inheritance diagram for protocols::score_filters::GeometryFilter:

Inheritance graph

[legend]

Public Member Functions
	GeometryFilter ()

bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...

void	report (std::ostream &out, core::pose::Pose const &pose) const override

core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...

core::Size	compute (core::pose::Pose const &pose) const

filters::FilterOP	clone () const override

filters::FilterOP	fresh_instance () const override

	~GeometryFilter () override

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...

std::string	name () const override

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	~Filter () override

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
core::Real	omega_cutoff_

core::Real	cart_bonded_cutoff_

std::string	filename_

core::Real	cst_cutoff_

core::Size	start_

core::Size	end_

bool	count_bad_residues_

core::select::residue_selector::ResidueSelectorCOP	selector_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

◆ GeometryFilter()

protocols::score_filters::GeometryFilter::GeometryFilter ( )

◆ ~GeometryFilter()

protocols::score_filters::GeometryFilter::~GeometryFilter ( )

overridedefault

Member Function Documentation

◆ apply()

bool protocols::score_filters::GeometryFilter::apply ( core::pose::Pose const & pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), and protocols::score_filters::TR().

◆ class_name()

std::string protocols::score_filters::GeometryFilter::class_name ( )

static

Referenced by protocols::score_filters::GeometryFilterCreator::keyname(), name(), and provide_xml_schema().

◆ clone()

filters::FilterOP protocols::score_filters::GeometryFilter::clone ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

◆ compute()

core::Size protocols::score_filters::GeometryFilter::compute ( core::pose::Pose const & pose ) const

References core::scoring::atom_pair_constraint, core::scoring::cart_bonded, cart_bonded_cutoff_, core::pose::Pose::chain(), cst_cutoff_, end_, core::pose::Pose::energies(), core::pose::symmetry::extract_asymmetric_unit(), filename_, core::pose::Pose::fold_tree(), core::scoring::get_score_function(), core::kinematics::FoldTree::is_cutpoint(), core::kinematics::FoldTree::is_jump_point(), core::conformation::Residue::is_protein(), core::conformation::symmetry::is_symmetric(), protocols::mean_field::max(), protocols::mean_field::min(), core::conformation::Residue::name3(), core::pose::Pose::omega(), core::scoring::omega, omega_cutoff_, core::pose::Pose::residue(), core::scoring::Energies::residue_total_energies(), protocols::filters::Filter::score(), selector_, core::pose::Pose::size(), protocols::loops::start, start_, protocols::loops::stop, protocols::score_filters::TR(), and core::pose::Pose::update_residue_neighbors().

Referenced by apply(), report(), and report_sm().

◆ fresh_instance()

filters::FilterOP protocols::score_filters::GeometryFilter::fresh_instance ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

◆ name()

std::string protocols::score_filters::GeometryFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

◆ parse_my_tag()

void protocols::score_filters::GeometryFilter::parse_my_tag	(	utility::tag::TagCOP	,
		basic::datacache::DataMap &
	)

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References cart_bonded_cutoff_, count_bad_residues_, cst_cutoff_, end_, filename_, omega_cutoff_, core::select::residue_selector::parse_residue_selector(), selector_, and start_.

◆ provide_xml_schema()

void protocols::score_filters::GeometryFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References core::select::residue_selector::attributes_for_parse_residue_selector(), class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::score_filters::GeometryFilterCreator::provide_xml_schema().

◆ report()

void protocols::score_filters::GeometryFilter::report	(	std::ostream &	out,
		core::pose::Pose const &	pose
	)		const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute().

◆ report_sm()

core::Real protocols::score_filters::GeometryFilter::report_sm ( core::pose::Pose const & ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute(), and count_bad_residues_.

Member Data Documentation

◆ cart_bonded_cutoff_

core::Real protocols::score_filters::GeometryFilter::cart_bonded_cutoff_

private

Referenced by compute(), and parse_my_tag().

◆ count_bad_residues_

bool protocols::score_filters::GeometryFilter::count_bad_residues_

private

Referenced by parse_my_tag(), and report_sm().

◆ cst_cutoff_

core::Real protocols::score_filters::GeometryFilter::cst_cutoff_

private

Referenced by compute(), and parse_my_tag().

◆ end_

core::Size protocols::score_filters::GeometryFilter::end_

private

Referenced by compute(), and parse_my_tag().

◆ filename_

std::string protocols::score_filters::GeometryFilter::filename_

private

Referenced by compute(), and parse_my_tag().

◆ omega_cutoff_

core::Real protocols::score_filters::GeometryFilter::omega_cutoff_

private

Referenced by compute(), and parse_my_tag().

◆ selector_

core::select::residue_selector::ResidueSelectorCOP protocols::score_filters::GeometryFilter::selector_

private

Referenced by compute(), and parse_my_tag().

◆ start_

core::Size protocols::score_filters::GeometryFilter::start_

private

Referenced by compute(), and parse_my_tag().

The documentation for this class was generated from the following files:

src/protocols/score_filters/GeometryFilter.hh
src/protocols/score_filters/GeometryFilter.cc