protocols::simple_moves::bb_sampler::SugarBBSampler Class Reference

Sample dihdrals using sugar bb data. More...

#include <SugarBBSampler.hh>

Inheritance diagram for protocols::simple_moves::bb_sampler::SugarBBSampler:

Public Member Functions
	SugarBBSampler ()
	SugarBBSampler (core::id::MainchainTorsionType torsion_type, BBSampleType sampling_type=probability)
	SugarBBSampler (SugarBBSampler const &src)
	~SugarBBSampler () override
SugarBBSamplerOP	clone () const
core::Real	get_torsion (core::pose::Pose const &pose, core::Size resnum) const override
void	set_torsion_to_pose (core::pose::Pose &pose, core::Size resnum) const override
	Set torsions to pose. More...
std::string	name () const
std::string	get_name () const override
Public Member Functions inherited from protocols::simple_moves::bb_sampler::BBDihedralSampler
	BBDihedralSampler ()
	BBDihedralSampler (core::id::MainchainTorsionType torsion_type, BBSampleType sampling_type=probability)
	BBDihedralSampler (BBDihedralSampler const &src)
	~BBDihedralSampler () override
BBDihedralSamplerOP	clone () const
Public Member Functions inherited from protocols::simple_moves::bb_sampler::BBDihedralSamplerBase
	BBDihedralSamplerBase ()
	BBDihedralSamplerBase (core::id::MainchainTorsionType torsion_type, BBSampleType sampling_type=probability)
	BBDihedralSamplerBase (BBDihedralSamplerBase const &src)
	~BBDihedralSamplerBase () override
BBDihedralSamplerBaseOP	clone () const
void	set_torsion_type (core::id::MainchainTorsionType torsion_type)
	Set the torsion type we will be querying. More...
core::Size	get_torsion_type () const
void	set_sample_type (BBSampleType sampling_type)
	Set the sampling type. Default is to sample probabilistically on the data. More...

Additional Inherited Members
Protected Attributes inherited from protocols::simple_moves::bb_sampler::BBDihedralSamplerBase
core::id::MainchainTorsionType	torsion_type_
BBSampleType	sampling_type_

Detailed Description

Sample dihdrals using sugar bb data.

Constructor & Destructor Documentation

SugarBBSampler() [1/3]

protocols::simple_moves::bb_sampler::SugarBBSampler::SugarBBSampler

(

)

SugarBBSampler() [2/3]

protocols::simple_moves::bb_sampler::SugarBBSampler::SugarBBSampler	(	core::id::MainchainTorsionType	torsion_type,
		BBSampleType	sampling_type = probability
	)

SugarBBSampler() [3/3]

protocols::simple_moves::bb_sampler::SugarBBSampler::SugarBBSampler ( SugarBBSampler const &  src )

default

~SugarBBSampler()

protocols::simple_moves::bb_sampler::SugarBBSampler::~SugarBBSampler ( )

overridedefault

Member Function Documentation

clone()

SugarBBSamplerOP protocols::simple_moves::bb_sampler::SugarBBSampler::clone

(

)

const

get_name()

std::string protocols::simple_moves::bb_sampler::SugarBBSampler::get_name ( ) const

inlineoverridevirtual

Reimplemented from protocols::simple_moves::bb_sampler::BBDihedralSampler.

References name().

get_torsion()

core::Real protocols::simple_moves::bb_sampler::SugarBBSampler::get_torsion ( core::pose::Pose const &  pose, core::Size  resnum  ) const

overridevirtual

Implements protocols::simple_moves::bb_sampler::BBDihedralSampler.

References core::scoring::carbohydrates::CHIDihedralSamplingData::angles, core::scoring::carbohydrates::OmegaPreferenceSamplingData::angles, protocols::mean_field::arg_max(), core::conformation::Residue::carbohydrate_info(), core::scoring::carbohydrates::get_CHI_energy_function_linkage_type_for_residue_in_pose(), core::scoring::carbohydrates::get_omega_preference_for_residue_in_pose(), core::scoring::carbohydrates::OmegaPreferencesFunction::get_sampling_data(), core::pose::Pose::glycan_tree_set(), core::conformation::Residue::is_carbohydrate(), core::scoring::carbohydrates::LINKAGE_NA, protocols::simple_moves::bb_sampler::minima, core::id::omega_dihedral, core::pose::Pose::pdb_info(), core::id::phi_dihedral, core::scoring::carbohydrates::PREFERENCE_NA, core::scoring::carbohydrates::CHIDihedralSamplingData::probabilities, core::scoring::carbohydrates::OmegaPreferenceSamplingData::probabilities, protocols::simple_moves::bb_sampler::probability, core::id::psi_dihedral, core::pose::Pose::residue(), core::scoring::rg, protocols::simple_moves::bb_sampler::BBDihedralSamplerBase::sampling_type_, core::scoring::sugar_bb, core::id::to_string(), protocols::simple_moves::bb_sampler::BBDihedralSamplerBase::torsion_type_, and protocols::simple_moves::TR().

Referenced by set_torsion_to_pose().

name()

std::string protocols::simple_moves::bb_sampler::SugarBBSampler::name ( ) const

inline

Referenced by get_name().

set_torsion_to_pose()

void protocols::simple_moves::bb_sampler::SugarBBSampler::set_torsion_to_pose ( core::pose::Pose &  pose, core::Size  resnum  ) const

overridevirtual

Set torsions to pose.

Implements protocols::simple_moves::bb_sampler::BBDihedralSampler.

References core::pose::get_bb_torsion(), core::conformation::carbohydrates::get_n_glycosidic_torsions_in_res(), get_torsion(), core::pose::Pose::glycan_tree_set(), core::id::omega_dihedral, core::conformation::carbohydrates::set_glycosidic_torsion(), protocols::simple_moves::bb_sampler::BBDihedralSamplerBase::torsion_type_, and protocols::simple_moves::TR().

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The documentation for this class was generated from the following files:

• src/protocols/simple_moves/bb_sampler/SugarBBSampler.hh
• src/protocols/simple_moves/bb_sampler/SugarBBSampler.cc