Rosetta  2021.16
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standard_mains.hh File Reference

Main methods that implement the typical running patterns for executables. More...

#include <core/pose/Pose.fwd.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <protocols/moves/Mover.fwd.hh>
#include <core/types.hh>
#include <protocols/jobdist/Jobs.fwd.hh>
#include <utility/vector1.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::jobdist
 

Functions

void protocols::jobdist::register_options_universal_main ()
 Handles loading and writing of silent files and or PDB files - superseeds the bottom two functions. More...
 
int protocols::jobdist::universal_main (protocols::moves::Mover &mover, float thinout_factor)
 
int protocols::jobdist::main_plain_mover (protocols::moves::Mover &mover, bool random_permutation=true)
 Reads inputs from -s/-l/-nstruct and writes (possibly gzipped) PDB files. Supplied Mover is used to transform input structure into output structure. More...
 
int protocols::jobdist::main_plain_pdb_mover (protocols::moves::Mover &mover, core::scoring::ScoreFunctionOP scorefxn)
 Reads inputs from -s/-l/-nstruct and writes (possibly gzipped) PDB files. Supplied Mover is used to transform input structure into output structure. More...
 
utility::vector1< BasicJobOPprotocols::jobdist::load_s_and_l ()
 Reads inputs from -s/-l/-nstruct and writes atomtree_diff silent files. Supplied Mover is used to transform input structure into output structure. undefined - commenting out to make pyrosetta compile... More...
 
std::string protocols::jobdist::get_output_tag (core::pose::Pose const &pose)
 Helper function to safely get current output tag that's cached in Pose. More...
 
std::map< std::string, core::Realprotocols::jobdist::get_score_map (core::pose::Pose const &pose)
 Helper function to safely get score_map that's cached in Pose. More...
 

Detailed Description

Main methods that implement the typical running patterns for executables.

Author
Ian W. Davis