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protocols::fldsgn Namespace Reference

Namespaces

 filters
 
 potentials
 
 topology
 

Classes

class  BluePrintBDR
 
class  BluePrintBDRCreator
 
class  CircularPermutation
 
class  CircularPermutationCreator
 
class  MatchResidues
 
class  MatchResiduesMover
 
class  MatchResiduesMoverCreator
 
class  MyAtom
 
class  NcontactsCalculator
 
struct  ResiduePair
 
class  SheetConstraintGenerator
 
class  SheetConstraintGeneratorCreator
 
class  SheetRemodelConstraintGenerator
 Remodel constraint generator for adding sheet constraints. More...
 
class  SheetRemodelConstraintGeneratorCreator
 

Typedefs

typedef
utility::pointer::shared_ptr
< BluePrintBDR
BluePrintBDR_OP
 BluePrintBDR owning pointer. More...
 
typedef
utility::pointer::shared_ptr
< BluePrintBDR const > 
BluePrintBDR_COP
 BluePrintBDR const owning pointer. More...
 
typedef
utility::pointer::weak_ptr
< BluePrintBDR
BluePrintBDR_AP
 BluePrintBDR access pointer. More...
 
typedef
utility::pointer::weak_ptr
< BluePrintBDR const > 
BluePrintBDR_CAP
 BluePrintBDR const access pointer. More...
 
typedef
utility::pointer::shared_ptr
< CircularPermutation
CircularPermutation_OP
 CircularPermutation owning pointer. More...
 
typedef
utility::pointer::shared_ptr
< CircularPermutation const > 
CircularPermutation_COP
 CircularPermutation const owning pointer. More...
 
typedef
utility::pointer::weak_ptr
< CircularPermutation
CircularPermutation_AP
 CircularPermutation access pointer. More...
 
typedef
utility::pointer::weak_ptr
< CircularPermutation const > 
CircularPermutation_CAP
 CircularPermutation const access pointer. More...
 
using VecSize = utility::vector1< core::Size >
 
using VecVecSize = utility::vector1< VecSize >
 
typedef
utility::pointer::shared_ptr
< MatchResiduesMover
MatchResiduesMoverOP
 
typedef
utility::pointer::shared_ptr
< MatchResiduesMover const > 
MatchResiduesMoverCOP
 
typedef
utility::pointer::shared_ptr
< SetAACompositionPotential > 
SetAACompositionPotential_OP
 SetAACompositionPotential owning pointer. More...
 
typedef
utility::pointer::shared_ptr
< SetAACompositionPotential
const > 
SetAACompositionPotential_COP
 SetAACompositionPotential const owning pointer. More...
 
typedef
utility::pointer::weak_ptr
< SetAACompositionPotential > 
SetAACompositionPotential_AP
 SetAACompositionPotential access pointer. More...
 
typedef
utility::pointer::weak_ptr
< SetAACompositionPotential
const > 
SetAACompositionPotential_CAP
 SetAACompositionPotential const access pointer. More...
 
typedef
utility::pointer::shared_ptr
< SheetConstraintGenerator
SheetConstraintGeneratorOP
 
typedef
utility::pointer::shared_ptr
< SheetConstraintGenerator
const > 
SheetConstraintGeneratorCOP
 
typedef utility::vector1
< ResiduePair
ResiduePairs
 
typedef
utility::pointer::shared_ptr
< SheetRemodelConstraintGenerator
SheetRemodelConstraintGeneratorOP
 
typedef
utility::pointer::shared_ptr
< SheetRemodelConstraintGenerator
const > 
SheetRemodelConstraintGeneratorCOP
 

Functions

static basic::Tracer TR ("protocols.fldsgn.BluePrintBDR")
 
static basic::Tracer TR ("protocols.fldsgn.CircularPermutation")
 
std::string subtag_for_match_type (std::string const &foo)
 

Typedef Documentation

typedef utility::pointer::weak_ptr< BluePrintBDR > protocols::fldsgn::BluePrintBDR_AP

BluePrintBDR access pointer.

typedef utility::pointer::weak_ptr< BluePrintBDR const > protocols::fldsgn::BluePrintBDR_CAP

BluePrintBDR const access pointer.

typedef utility::pointer::shared_ptr< BluePrintBDR const > protocols::fldsgn::BluePrintBDR_COP

BluePrintBDR const owning pointer.

typedef utility::pointer::shared_ptr< BluePrintBDR > protocols::fldsgn::BluePrintBDR_OP

BluePrintBDR owning pointer.

typedef utility::pointer::weak_ptr< CircularPermutation > protocols::fldsgn::CircularPermutation_AP

CircularPermutation access pointer.

typedef utility::pointer::weak_ptr< CircularPermutation const > protocols::fldsgn::CircularPermutation_CAP

CircularPermutation const access pointer.

typedef utility::pointer::shared_ptr< CircularPermutation const > protocols::fldsgn::CircularPermutation_COP

CircularPermutation const owning pointer.

typedef utility::pointer::shared_ptr< CircularPermutation > protocols::fldsgn::CircularPermutation_OP

CircularPermutation owning pointer.

typedef utility::pointer::shared_ptr< MatchResiduesMover const > protocols::fldsgn::MatchResiduesMoverCOP
typedef utility::pointer::shared_ptr< MatchResiduesMover > protocols::fldsgn::MatchResiduesMoverOP
typedef utility::vector1< ResiduePair > protocols::fldsgn::ResiduePairs
typedef utility::pointer::weak_ptr< SetAACompositionPotential > protocols::fldsgn::SetAACompositionPotential_AP

SetAACompositionPotential access pointer.

typedef utility::pointer::weak_ptr< SetAACompositionPotential const > protocols::fldsgn::SetAACompositionPotential_CAP

SetAACompositionPotential const access pointer.

typedef utility::pointer::shared_ptr< SetAACompositionPotential const > protocols::fldsgn::SetAACompositionPotential_COP

SetAACompositionPotential const owning pointer.

typedef utility::pointer::shared_ptr< SetAACompositionPotential > protocols::fldsgn::SetAACompositionPotential_OP

SetAACompositionPotential owning pointer.

typedef utility::pointer::shared_ptr< SheetConstraintGenerator const > protocols::fldsgn::SheetConstraintGeneratorCOP
using protocols::fldsgn::VecSize = typedef utility::vector1<core::Size>
using protocols::fldsgn::VecVecSize = typedef utility::vector1<VecSize>

Function Documentation

std::string protocols::fldsgn::subtag_for_match_type ( std::string const &  foo)
static basic::Tracer protocols::fldsgn::TR ( "protocols.fldsgn.CircularPermutation"  )
static
static basic::Tracer protocols::fldsgn::TR ( "protocols.fldsgn.BluePrintBDR"  )
static

Referenced by protocols::fldsgn::filters::HelixBendFilter::apply(), protocols::fldsgn::filters::StrandCurvatureByLevels::apply(), protocols::fldsgn::SheetConstraintGenerator::apply(), protocols::fldsgn::filters::StrandHelixGeometryFilter::apply(), protocols::fldsgn::filters::HelixKinkFilter::apply(), protocols::fldsgn::CircularPermutation::apply(), protocols::fldsgn::filters::HelixPairingFilter::apply(), protocols::fldsgn::filters::HSSTripletFilter::apply(), protocols::fldsgn::topology::BetaAlphaBetaMotif::calc_helix_cycle(), protocols::fldsgn::filters::HSSTripletFilter::check_elements(), protocols::fldsgn::filters::HelixBendFilter::compute(), protocols::fldsgn::MatchResidues::compute(), protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::compute(), protocols::fldsgn::filters::HelixPairingFilter::compute(), protocols::fldsgn::filters::HSSTripletFilter::compute(), protocols::fldsgn::topology::compute_bulges(), protocols::fldsgn::filters::HelixPairingFilter::compute_helix_pairing_set(), protocols::fldsgn::SheetConstraintGenerator::compute_residue_pairs(), protocols::fldsgn::filters::HSSTripletFilter::get_hss3s(), protocols::fldsgn::topology::SheetSet::initialize(), protocols::fldsgn::topology::StrandPairingSet::initialize_by_dimer_pairs(), protocols::fldsgn::SheetConstraintGenerator::initialize_from_blueprint(), protocols::fldsgn::MatchResidues::parse_my_tag(), protocols::fldsgn::filters::HelixKinkFilter::parse_my_tag(), protocols::fldsgn::filters::HelixPairingFilter::parse_my_tag(), protocols::fldsgn::filters::HSSTripletFilter::parse_my_tag(), protocols::fldsgn::topology::HSSTripletSet::push_back(), protocols::fldsgn::topology::StrandPairing::redefine_begin_end(), protocols::fldsgn::filters::HelixBendFilter::report(), protocols::fldsgn::filters::HelixBendFilter::report_sm(), and protocols::fldsgn::topology::BetaAlphaBetaMotifSet::set_babmotifs().