Rosetta  2020.37
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Public Member Functions | Static Public Member Functions | Private Attributes | List of all members
core::select::residue_selector::PhiSelector Class Reference

A ResidueSelector that selects alpha-amino acids that are either in the positive phi or negative phi region of Ramachandran space (depending on user preferences). More...

#include <PhiSelector.hh>

Inheritance diagram for core::select::residue_selector::PhiSelector:
Inheritance graph
[legend]

Public Member Functions

 PhiSelector ()
 Constructor. More...
 
 ~PhiSelector () override
 Destructor. More...
 
ResidueSelectorOP clone () const override
 Clone function. More...
 
core::select::residue_selector::ResidueSubset apply (core::pose::Pose const &pose) const override
 "Apply" function. More...
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &datamap) override
 XML parse. More...
 
std::string get_name () const override
 Get the mover class name. More...
 
bool select_positive_phi () const
 Are we selecting the residues in the positive phi region? More...
 
void set_select_positive_phi (bool const setting)
 Set whether we're selecting residues in the positive phi region. More...
 
bool ignore_unconnected_upper () const
 Are we ignoring residues with no upper connection? More...
 
void set_ignore_unconnected_upper (bool const setting)
 Set whether we're ignoring residues with no upper connection. More...
 
- Public Member Functions inherited from core::select::residue_selector::ResidueSelector
 ResidueSelector ()
 Constructor. More...
 
 ~ResidueSelector () override
 Destructor. More...
 
virtual bool residue_selector_provides_citation_info () const
 Does this residue selector provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool residue_selector_is_unpublished () const
 Does this residue selector indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static std::string class_name ()
 Get the mover class name. More...
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 Provide XSD information, allowing automatic evaluation of bad XML. More...
 

Private Attributes

bool select_positive_phi_
 Are we selecting the residues in the positive phi region? More...
 
bool ignore_unconnected_upper_
 Are we ignoring residues with no upper connection? More...
 

Detailed Description

A ResidueSelector that selects alpha-amino acids that are either in the positive phi or negative phi region of Ramachandran space (depending on user preferences).

Constructor & Destructor Documentation

core::select::residue_selector::PhiSelector::PhiSelector ( )

Constructor.

core::select::residue_selector::PhiSelector::~PhiSelector ( )
overridedefault

Destructor.

Member Function Documentation

ResidueSubset core::select::residue_selector::PhiSelector::apply ( core::pose::Pose const &  pose) const
overridevirtual
std::string core::select::residue_selector::PhiSelector::class_name ( )
static
ResidueSelectorOP core::select::residue_selector::PhiSelector::clone ( ) const
overridevirtual

Clone function.

Copy this object and return owning pointer to the copy (created on the heap).

Implements core::select::residue_selector::ResidueSelector.

std::string core::select::residue_selector::PhiSelector::get_name ( ) const
overridevirtual

Get the mover class name.

Implements core::select::residue_selector::ResidueSelector.

References class_name().

bool core::select::residue_selector::PhiSelector::ignore_unconnected_upper ( ) const
inline

Are we ignoring residues with no upper connection?

Default true.

References ignore_unconnected_upper_.

Referenced by apply(), and parse_my_tag().

void core::select::residue_selector::PhiSelector::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap &  datamap 
)
overridevirtual
void core::select::residue_selector::PhiSelector::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static

Provide XSD information, allowing automatic evaluation of bad XML.

References class_name(), and core::select::residue_selector::xsd_type_definition_w_attributes().

Referenced by core::select::residue_selector::PhiSelectorCreator::provide_xml_schema().

bool core::select::residue_selector::PhiSelector::select_positive_phi ( ) const
inline

Are we selecting the residues in the positive phi region?

Default true.

References select_positive_phi_.

Referenced by apply(), and parse_my_tag().

void core::select::residue_selector::PhiSelector::set_ignore_unconnected_upper ( bool const  setting)
inline

Set whether we're ignoring residues with no upper connection.

References ignore_unconnected_upper_.

Referenced by parse_my_tag().

void core::select::residue_selector::PhiSelector::set_select_positive_phi ( bool const  setting)
inline

Set whether we're selecting residues in the positive phi region.

References select_positive_phi_.

Referenced by parse_my_tag().

Member Data Documentation

bool core::select::residue_selector::PhiSelector::ignore_unconnected_upper_
private

Are we ignoring residues with no upper connection?

Default true.

Referenced by ignore_unconnected_upper(), and set_ignore_unconnected_upper().

bool core::select::residue_selector::PhiSelector::select_positive_phi_
private

Are we selecting the residues in the positive phi region?

Default true.

Referenced by select_positive_phi(), and set_select_positive_phi().


The documentation for this class was generated from the following files: