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Public Types | Public Member Functions | Public Attributes | Static Public Attributes | List of all members
protocols::indexed_structure_store::SegmentSequenceProfile Struct Reference

#include <SegmentSequenceProfile.hh>

Public Types

typedef SegmentSequenceProfileConfig Config
 

Public Member Functions

 SegmentSequenceProfile ()=default
 
 SegmentSequenceProfile (Config conf)
 
SegmentSequenceProfileResult segment_profile (StructureStore &structure_store, search::StructureDatabase &structure_db, core::pose::Pose &context, core::Size segment_start, core::Size segment_end)
 

Public Attributes

search::PairQuerySummaryStatistics query_stats
 
SegmentSequenceProfileConfig config
 

Static Public Attributes

static std::map< core::chemical::AA, core::Realaa_background_distribution
 

Member Typedef Documentation

◆ Config

Constructor & Destructor Documentation

◆ SegmentSequenceProfile() [1/2]

protocols::indexed_structure_store::SegmentSequenceProfile::SegmentSequenceProfile ( )
default

◆ SegmentSequenceProfile() [2/2]

protocols::indexed_structure_store::SegmentSequenceProfile::SegmentSequenceProfile ( Config  conf)
inline

Member Function Documentation

◆ segment_profile()

SegmentSequenceProfileResult protocols::indexed_structure_store::SegmentSequenceProfile::segment_profile ( StructureStore structure_store,
search::StructureDatabase structure_db,
core::pose::Pose context,
core::Size  segment_start,
core::Size  segment_end 
)

Member Data Documentation

◆ aa_background_distribution

std::map< core::chemical::AA, core::Real > protocols::indexed_structure_store::SegmentSequenceProfile::aa_background_distribution
static
Initial value:
= {
}
@ aa_trp
Definition: AA.hh:62
@ aa_his
Definition: AA.hh:50
@ aa_val
Definition: AA.hh:61
@ aa_ile
Definition: AA.hh:51
@ aa_thr
Definition: AA.hh:60
@ aa_arg
Definition: AA.hh:58
@ aa_met
Definition: AA.hh:54
@ aa_gly
Definition: AA.hh:49
@ aa_asp
Definition: AA.hh:46
@ aa_asn
Definition: AA.hh:55
@ aa_ala
Definition: AA.hh:43
@ aa_lys
Definition: AA.hh:52
@ aa_tyr
Definition: AA.hh:63
@ aa_glu
Definition: AA.hh:47
@ aa_pro
Definition: AA.hh:56
@ aa_gln
Definition: AA.hh:57
@ aa_leu
Definition: AA.hh:53
@ aa_phe
Definition: AA.hh:48
@ aa_ser
Definition: AA.hh:59
@ aa_cys
Definition: AA.hh:45

◆ config

SegmentSequenceProfileConfig protocols::indexed_structure_store::SegmentSequenceProfile::config

◆ query_stats

search::PairQuerySummaryStatistics protocols::indexed_structure_store::SegmentSequenceProfile::query_stats

The documentation for this struct was generated from the following files: