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protocols::membrane::scoring::FaWaterToBilayerEnergy Member List

This is the complete list of members for protocols::membrane::scoring::FaWaterToBilayerEnergy, including all inherited members.

atomistic_energy(core::Size atmno, conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &scorefxn, EnergyMap &emap) constcore::scoring::methods::EnergyMethodvirtual
atomistic_pair_energy(core::Size atmno1, conformation::Residue const &rsd1, core::Size atomno2, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &scorefxn, EnergyMap &emap) constcore::scoring::methods::EnergyMethodvirtual
atoms_with_dof_derivatives(conformation::Residue const &res, pose::Pose const &pose) constcore::scoring::methods::OneBodyEnergyvirtual
atypes_list_protocols::membrane::scoring::FaWaterToBilayerEnergymutableprivate
clone() const overrideprotocols::membrane::scoring::FaWaterToBilayerEnergyvirtual
ContextDependentOneBodyEnergy(EnergyMethodCreatorOP)core::scoring::methods::ContextDependentOneBodyEnergy
defines_dof_derivatives(pose::Pose const &p) constcore::scoring::methods::OneBodyEnergyvirtual
defines_high_order_terms(pose::Pose const &) constcore::scoring::methods::EnergyMethodvirtual
defines_score_for_residue(conformation::Residue const &) constcore::scoring::methods::OneBodyEnergyvirtual
EnergyMethod(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethod
eval_atom_derivative(core::id::AtomID const &id, core::pose::Pose const &pose, core::kinematics::DomainMap const &domain_map, core::scoring::ScoreFunction const &sfxn, core::scoring::EnergyMap const &emap, core::Vector &F1, core::Vector &F2) const overrideprotocols::membrane::scoring::FaWaterToBilayerEnergy
core::scoring::methods::ContextDependentOneBodyEnergy::eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) constcore::scoring::methods::EnergyMethodvirtual
eval_fa_wtbe(MEnvAtomParams const &p) constprotocols::membrane::scoring::FaWaterToBilayerEnergy
eval_residue_derivatives(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, pose::Pose const &pose, EnergyMap const &weights, utility::vector1< DerivVectorPair > &atom_derivs) constcore::scoring::methods::OneBodyEnergyvirtual
eval_residue_dof_derivative(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, id::DOF_ID const &dof_id, id::TorsionID const &torsion_id, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights) constcore::scoring::methods::OneBodyEnergyvirtual
fa_wtbe_weight_protocols::membrane::scoring::FaWaterToBilayerEnergymutableprivate
FaWaterToBilayerEnergy()protocols::membrane::scoring::FaWaterToBilayerEnergy
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) constcore::scoring::methods::EnergyMethodvirtual
finalize_after_minimizing(pose::Pose &pose) constcore::scoring::methods::EnergyMethodvirtual
finalize_total_energy(core::pose::Pose &pose, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &emap) const overrideprotocols::membrane::scoring::FaWaterToBilayerEnergyvirtual
get_atype_index(std::string atype_name) constprotocols::membrane::scoring::FaWaterToBilayerEnergyprivate
get_menv_params_for_residue(core::pose::Pose const &pose, core::conformation::Residue const &rsd, core::Size atomno) constprotocols::membrane::scoring::FaWaterToBilayerEnergy
has_atomistic_energies() constcore::scoring::methods::EnergyMethodvirtual
has_atomistic_pairwise_energies() constcore::scoring::methods::EnergyMethodvirtual
indicate_required_context_graphs(utility::vector1< bool > &) const overrideprotocols::membrane::scoring::FaWaterToBilayerEnergyvirtual
memb_lk_dgrefce_protocols::membrane::scoring::FaWaterToBilayerEnergymutableprivate
method_type() const overridecore::scoring::methods::ContextDependentOneBodyEnergyvirtual
minimize_in_whole_structure_context(pose::Pose const &) constcore::scoring::methods::EnergyMethodvirtual
OneBodyEnergy(EnergyMethodCreatorOP)core::scoring::methods::OneBodyEnergy
parent typedefprotocols::membrane::scoring::FaWaterToBilayerEnergy
prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) constcore::scoring::methods::EnergyMethodvirtual
provide_citation_info(basic::citation_manager::CitationCollectionList &) constcore::scoring::methods::EnergyMethodvirtual
requires_a_setup_for_derivatives_for_residue_opportunity(pose::Pose const &pose) constcore::scoring::methods::OneBodyEnergyvirtual
requires_a_setup_for_scoring_for_residue_opportunity_during_minimization(pose::Pose const &pose) constcore::scoring::methods::OneBodyEnergyvirtual
requires_a_setup_for_scoring_for_residue_opportunity_during_regular_scoring(pose::Pose const &pose) constcore::scoring::methods::EnergyMethodvirtual
residue_energy(core::conformation::Residue const &rsd, core::pose::Pose const &pose, core::scoring::EnergyMap &emap) const overrideprotocols::membrane::scoring::FaWaterToBilayerEnergyvirtual
residue_energy_ext(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, pose::Pose const &pose, EnergyMap &emap) constcore::scoring::methods::OneBodyEnergyvirtual
score_types() constcore::scoring::methods::EnergyMethodinline
score_types_core::scoring::methods::EnergyMethodprivate
set_score_types(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethodprotected
setup_for_derivatives(core::pose::Pose &pose, core::scoring::ScoreFunction const &scfxn) const overrideprotocols::membrane::scoring::FaWaterToBilayerEnergyvirtual
setup_for_derivatives_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, ResSingleMinimizationData &min_data, basic::datacache::BasicDataCache &res_data_cache) constcore::scoring::methods::OneBodyEnergyvirtual
setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) constcore::scoring::methods::EnergyMethodvirtual
setup_for_minimizing_for_residue(conformation::Residue const &rsd, pose::Pose const &, ScoreFunction const &, kinematics::MinimizerMapBase const &, basic::datacache::BasicDataCache &, ResSingleMinimizationData &) constcore::scoring::methods::OneBodyEnergyvirtual
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) constcore::scoring::methods::EnergyMethodvirtual
setup_for_packing_with_rotsets(pose::Pose &pose, pack_basic::RotamerSetsBaseOP const &rotsets, ScoreFunction const &sfxn) constcore::scoring::methods::EnergyMethodvirtual
setup_for_scoring(core::pose::Pose &pose, core::scoring::ScoreFunction const &) const overrideprotocols::membrane::scoring::FaWaterToBilayerEnergyvirtual
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, ResSingleMinimizationData &min_data) constcore::scoring::methods::OneBodyEnergyvirtual
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) constcore::scoring::methods::OneBodyEnergy
core::scoring::methods::EnergyMethod::setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) constcore::scoring::methods::EnergyMethodvirtual
show_additional_info(std::ostream &, pose::Pose &, bool) constcore::scoring::methods::EnergyMethodvirtual
update_residue_for_packing(pose::Pose &, Size resid) constcore::scoring::methods::EnergyMethodvirtual
use_extended_residue_energy_interface() constcore::scoring::methods::OneBodyEnergyvirtual
version() const overrideprotocols::membrane::scoring::FaWaterToBilayerEnergyprivatevirtual
water_lk_dgrefce_protocols::membrane::scoring::FaWaterToBilayerEnergymutableprivate
~OneBodyEnergy() overridecore::scoring::methods::OneBodyEnergy