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core::scoring::loop_graph Namespace Reference

Namespaces

 evaluator
 

Classes

struct  cycle_printer
 
class  Loop
 
class  LoopCloseEnergy
 
class  LoopCloseEnergyCreator
 
class  LoopCycle
 
class  LoopGraph
 

Typedefs

typedef
utility::pointer::shared_ptr
< Loop
LoopOP
 
typedef
utility::pointer::shared_ptr
< Loop const > 
LoopCOP
 
typedef
utility::pointer::shared_ptr
< LoopCycle
LoopCycleOP
 
typedef
utility::pointer::shared_ptr
< LoopCycle const > 
LoopCycleCOP
 
typedef
utility::pointer::shared_ptr
< LoopGraph
LoopGraphOP
 
typedef
utility::pointer::shared_ptr
< LoopGraph const > 
LoopGraphCOP
 
typedef
utility::pointer::shared_ptr
< util > 
utilOP
 
typedef
utility::pointer::shared_ptr
< util const > 
utilCOP
 

Functions

std::ostream & operator<< (std::ostream &os, Loop const &loop)
 
std::ostream & operator<< (std::ostream &os, LoopCycle const &loop_cycle)
 Test IO operator for debug and Python bindings. More...
 
void get_loop_atom (Size const res, core::pose::Pose const &pose, id::AtomID &atom_id, Vector &xyz, bool const takeoff)
 
void get_loop_atom (core::Size const res, core::pose::Pose const &pose, std::string const &atom_name, id::AtomID &atom_id, Vector &xyz)
 
LoopClosePotentialEvaluatorCOP get_loop_close_potential (pose::Pose const &pose, LoopCycle const &loop_cycle, core::Real const &loop_fixed_cost, bool const use_6D_potential)
 
LoopClosePotentialEvaluatorCOP get_6D_trans_rot_potential_evaluator (LoopCycle const &loop_cycle, core::Real const &loop_fixed_cost, pose::Pose const &pose)
 

Typedef Documentation

typedef utility::pointer::shared_ptr< Loop const > core::scoring::loop_graph::LoopCOP
typedef utility::pointer::shared_ptr< LoopCycle const > core::scoring::loop_graph::LoopCycleCOP
typedef utility::pointer::shared_ptr< LoopCycle > core::scoring::loop_graph::LoopCycleOP
typedef utility::pointer::shared_ptr< LoopGraph const > core::scoring::loop_graph::LoopGraphCOP
typedef utility::pointer::shared_ptr< LoopGraph > core::scoring::loop_graph::LoopGraphOP
typedef utility::pointer::shared_ptr< Loop > core::scoring::loop_graph::LoopOP
typedef utility::pointer::shared_ptr< util const > core::scoring::loop_graph::utilCOP
typedef utility::pointer::shared_ptr< util > core::scoring::loop_graph::utilOP

Function Documentation

evaluator::LoopClosePotentialEvaluatorCOP core::scoring::loop_graph::get_6D_trans_rot_potential_evaluator ( LoopCycle const &  loop_cycle,
core::Real const &  loop_fixed_cost,
pose::Pose const &  pose 
)
void core::scoring::loop_graph::get_loop_atom ( Size const  res,
core::pose::Pose const &  pose,
id::AtomID &  atom_id,
Vector xyz,
bool const  takeoff 
)
void core::scoring::loop_graph::get_loop_atom ( core::Size const  res,
core::pose::Pose const &  pose,
std::string const &  atom_name,
id::AtomID &  atom_id,
Vector xyz 
)
evaluator::LoopClosePotentialEvaluatorCOP core::scoring::loop_graph::get_loop_close_potential ( pose::Pose const &  pose,
LoopCycle const &  loop_cycle,
core::Real const &  loop_fixed_cost,
bool const  use_6D_potential 
)
std::ostream& core::scoring::loop_graph::operator<< ( std::ostream &  os,
LoopCycle const &  loop_cycle 
)

Test IO operator for debug and Python bindings.

References core::scoring::loop_graph::LoopCycle::loops_.

std::ostream& core::scoring::loop_graph::operator<< ( std::ostream &  os,
Loop const &  loop 
)