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protocols::membrane::SetMembraneCenterMover Class Reference

Membrane Position Translation Move. More...

#include <SetMembranePositionMover.hh>

Inheritance diagram for protocols::membrane::SetMembraneCenterMover:
Inheritance graph
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Public Member Functions

 SetMembraneCenterMover ()
 Constructors ///. More...
 
 SetMembraneCenterMover (core::Vector center)
 Custom Constructor. More...
 
 SetMembraneCenterMover (SetMembraneCenterMover const &src)
 Copy Constructor. More...
 
SetMembraneCenterMoveroperator= (SetMembraneCenterMover const &src)
 Assignment Operator. More...
 
 ~SetMembraneCenterMover () override
 Destructor. More...
 
std::string get_name () const override
 Mover Methods ///. More...
 
void apply (core::pose::Pose &pose) override
 Apply Translation to membrane position. More...
 
protocols::moves::MoverOP clone () const override
 Rosetta Scripts Methods ///. More...
 
protocols::moves::MoverOP fresh_instance () const override
 Create a Fresh Instance of this Mover. More...
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
 Pase Rosetta Scripts Options for this Mover. More...
 
- Public Member Functions inherited from protocols::moves::Mover
 Mover ()
 
virtual MoverOP create ()
 
MoverCOP get_self_ptr () const
 
MoverOP get_self_ptr ()
 
MoverCAP get_self_weak_ptr () const
 
MoverAP get_self_weak_ptr ()
 
 Mover (std::string const &type_name)
 sets the type for a mover; name_ has been removed (2010/05/14) More...
 
virtual void test_move (Pose &pose)
 : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More...
 
virtual bool reinitialize_for_each_job () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More...
 
virtual bool reinitialize_for_new_input () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More...
 
MoverStatus get_last_move_status () const
 end parser interface, start Job Distributor interface///////////// More...
 
void reset_status ()
 resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More...
 
virtual core::pose::PoseOP get_additional_output ()
 Mechanism by which a mover may return multiple output poses from a single input pose. More...
 
void set_type (std::string const &setting)
 Set the 'type' string. More...
 
std::string get_type () const
 
void type (const std::string &type_in)
 Set the 'type' string. More...
 
std::string const & type () const
 Get the set 'type' string. More...
 
virtual void set_input_pose (PoseCOP pose)
 setter for poses contained for rms More...
 
virtual void set_native_pose (PoseCOP pose)
 setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More...
 
PoseCOP get_input_pose () const
 
PoseCOP get_native_pose () const
 
void set_current_job (protocols::jobdist::BasicJobCOP job)
 
jobdist::BasicJobCOP get_current_job () const
 
virtual void set_current_tag (std::string const &new_tag)
 
std::string get_current_tag () const
 A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More...
 
virtual void show (std::ostream &output=std::cout) const
 Outputs details about the Mover, including current settings. More...
 
virtual core::Real last_proposal_density_ratio ()
 
virtual void clear_info ()
 Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More...
 
virtual Stringsinfo ()
 non-const accessor More...
 
virtual Strings const & info () const
 const accessor More...
 
virtual void provide_citation_info (basic::citation_manager::CitationCollectionList &) const
 Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...
 

Private Attributes

core::Vector center_
 

Additional Inherited Members

- Public Types inherited from protocols::moves::Mover
typedef utility::tag::TagCOP TagCOP
 
typedef core::pose::Pose Pose
 
typedef core::pose::PoseCOP PoseCOP
 
typedef std::list< std::string > Strings
 
- Static Public Member Functions inherited from protocols::moves::Mover
static std::string name ()
 
static void register_options ()
 Overload this static method if you access options within the mover. More...
 
- Protected Member Functions inherited from protocols::moves::Mover
void set_last_move_status (MoverStatus status)
 nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More...
 

Detailed Description

Membrane Position Translation Move.

Translate the center of the membrane stub ot the specified position

Constructor & Destructor Documentation

protocols::membrane::SetMembraneCenterMover::SetMembraneCenterMover ( )

Constructors ///.

Construct a Default Membrane Position Mover

Referenced by operator=().

protocols::membrane::SetMembraneCenterMover::SetMembraneCenterMover ( core::Vector  center)

Custom Constructor.

Specify a new center position to translate this stub to

Specify a new membrane center to move to

protocols::membrane::SetMembraneCenterMover::SetMembraneCenterMover ( SetMembraneCenterMover const &  src)
default

Copy Constructor.

Make a deep copy of this mover object

protocols::membrane::SetMembraneCenterMover::~SetMembraneCenterMover ( )
overridedefault

Destructor.

Member Function Documentation

void protocols::membrane::SetMembraneCenterMover::apply ( core::pose::Pose pose)
overridevirtual

Apply Translation to membrane position.

Apply Rotation/Translation to Membrane.

Translate membrane position to new center

Translate the membrane position in this pose to the new center position, and rotate to new normal

Implements protocols::moves::Mover.

References center_, core::pose::Pose::conformation(), core::conformation::Conformation::is_membrane(), core::pose::Pose::membrane_info(), and core::conformation::Conformation::update_membrane_position().

protocols::moves::MoverOP protocols::membrane::SetMembraneCenterMover::clone ( ) const
overridevirtual

Rosetta Scripts Methods ///.

Create a Clone of this mover

Reimplemented from protocols::moves::Mover.

protocols::moves::MoverOP protocols::membrane::SetMembraneCenterMover::fresh_instance ( ) const
overridevirtual

Create a Fresh Instance of this Mover.

Reimplemented from protocols::moves::Mover.

std::string protocols::membrane::SetMembraneCenterMover::get_name ( ) const
overridevirtual

Mover Methods ///.

Get the name of this mover

Implements protocols::moves::Mover.

SetMembraneCenterMover & protocols::membrane::SetMembraneCenterMover::operator= ( SetMembraneCenterMover const &  src)

Assignment Operator.

Make a deep copy of this mover object, overriding the assignment operator

References SetMembraneCenterMover().

void protocols::membrane::SetMembraneCenterMover::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap &   
)
overridevirtual

Pase Rosetta Scripts Options for this Mover.

Reimplemented from protocols::moves::Mover.

References center_, and protocols::membrane::read_center_normal_from_tag().

Member Data Documentation

core::Vector protocols::membrane::SetMembraneCenterMover::center_
private

Referenced by apply(), and parse_my_tag().


The documentation for this class was generated from the following files: