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Classes | Typedefs | Enumerations | Functions
core::scoring::aa_composition_energy Namespace Reference

Classes

class  AACompositionConstraint
 
class  AACompositionPropertiesSet
 AACompositionPropertiesSet, a helper class that stores: More...
 
class  AACompositionEnergySetup
 AACompositionEnergySetup, a helper class for the AACompositionEnergy energy method that stores all of its setup data. More...
 
class  SequenceConstraint
 

Typedefs

typedef utility::pointer::shared_ptr< AACompositionConstraintAACompositionConstraintOP
 
typedef utility::pointer::shared_ptr< AACompositionConstraint const > AACompositionConstraintCOP
 
typedef utility::pointer::shared_ptr< AACompositionPropertiesSetAACompositionPropertiesSetOP
 
typedef utility::pointer::shared_ptr< AACompositionPropertiesSet const > AACompositionPropertiesSetCOP
 
typedef utility::pointer::shared_ptr< AACompositionEnergySetupAACompositionEnergySetupOP
 
typedef utility::pointer::shared_ptr< AACompositionEnergySetup const > AACompositionEnergySetupCOP
 
typedef utility::pointer::shared_ptr< SequenceConstraintSequenceConstraintOP
 
typedef utility::pointer::shared_ptr< SequenceConstraint const > SequenceConstraintCOP
 

Enumerations

enum  TailFunction {
  tf_linear = 1 , tf_quadratic , tf_constant , tf_unknown ,
  tf_end_of_list =tf_unknown
}
 The different types of behaviour for the penalty values past the defined range. More...
 

Functions

static basic::Tracer TR ("core.scoring.aa_composition_energy.AACompositionConstraint")
 
static basic::Tracer TR ("core.scoring.aa_composition_energy.AACompositionEnergySetup")
 
static basic::Tracer TR ("core.scoring.aa_composition_energy.SequenceConstraint")
 

Typedef Documentation

◆ AACompositionConstraintCOP

◆ AACompositionConstraintOP

◆ AACompositionEnergySetupCOP

◆ AACompositionEnergySetupOP

◆ AACompositionPropertiesSetCOP

◆ AACompositionPropertiesSetOP

◆ SequenceConstraintCOP

◆ SequenceConstraintOP

Enumeration Type Documentation

◆ TailFunction

The different types of behaviour for the penalty values past the defined range.

When values are added to this enum, they should also be added to the AACompositionEnergySetup::get_tailfunction_name() function.

Enumerator
tf_linear 
tf_quadratic 
tf_constant 
tf_unknown 
tf_end_of_list 

Function Documentation

◆ TR() [1/3]

static basic::Tracer core::scoring::aa_composition_energy::TR ( "core.scoring.aa_composition_energy.AACompositionConstraint"  )
static

◆ TR() [2/3]

static basic::Tracer core::scoring::aa_composition_energy::TR ( "core.scoring.aa_composition_energy.AACompositionEnergySetup"  )
static

◆ TR() [3/3]

static basic::Tracer core::scoring::aa_composition_energy::TR ( "core.scoring.aa_composition_energy.SequenceConstraint"  )
static