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protocols::antibody_legacy Namespace Reference

Classes

class  Antibody
 antibody definition More...
 
class  AntibodyModeler
 
class  CDRH3Modeler
 Ab initio modeling of CDR H3 loop. More...
 
class  CloseOneMover
 Closes only one CDR onto a framework. More...
 
class  GraftMover
 Grafts a series of CDR onto a framework. More...
 
class  GraftOneMover
 Grafts only one CDR onto a framework. More...
 
class  LoopRlxMover
 Closes only one CDR onto a framework. More...
 

Typedefs

typedef
utility::pointer::shared_ptr
< CDRH3Modeler
CDRH3ModelerOP
 
typedef
utility::pointer::shared_ptr
< const CDRH3Modeler
CDRH3ModelerCOP
 
typedef
utility::pointer::shared_ptr
< GraftMover
GraftMoverOP
 
typedef
utility::pointer::shared_ptr
< const GraftMover
GraftMoverCOP
 
typedef
utility::pointer::shared_ptr
< GraftOneMover
GraftOneMoverOP
 
typedef
utility::pointer::shared_ptr
< const GraftOneMover
GraftOneMoverCOP
 
typedef
utility::pointer::shared_ptr
< CloseOneMover
CloseOneMoverOP
 
typedef
utility::pointer::shared_ptr
< const CloseOneMover
CloseOneMoverCOP
 
typedef
utility::pointer::shared_ptr
< LoopRlxMover
LoopRlxMoverOP
 
typedef
utility::pointer::shared_ptr
< const LoopRlxMover
LoopRlxMoverCOP
 

Functions

void simple_one_loop_fold_tree (pose::Pose &pose_in, loops::Loop const &loop)
 
void simple_fold_tree (pose::Pose &pose_in, core::Size jumppoint1, core::Size cutpoint, core::Size jumppoint2)
 
void read_H3_cter_fragment (Antibody &antibody_in, utility::vector1< fragment::FragData > &H3_base_library, bool is_camelid)
 
void read_H3_cter_fragment (Antibody &antibody_in, utility::vector1< core::fragment::FragData > &H3_base_library, bool is_camelid)
 

Typedef Documentation

typedef utility::pointer::shared_ptr< const CDRH3Modeler > protocols::antibody_legacy::CDRH3ModelerCOP
typedef utility::pointer::shared_ptr< CDRH3Modeler > protocols::antibody_legacy::CDRH3ModelerOP
typedef utility::pointer::shared_ptr<const CloseOneMover> protocols::antibody_legacy::CloseOneMoverCOP
typedef utility::pointer::shared_ptr< CloseOneMover > protocols::antibody_legacy::CloseOneMoverOP
typedef utility::pointer::shared_ptr< const GraftMover > protocols::antibody_legacy::GraftMoverCOP
typedef utility::pointer::shared_ptr< GraftMover > protocols::antibody_legacy::GraftMoverOP
typedef utility::pointer::shared_ptr<const GraftOneMover> protocols::antibody_legacy::GraftOneMoverCOP
typedef utility::pointer::shared_ptr< GraftOneMover > protocols::antibody_legacy::GraftOneMoverOP
typedef utility::pointer::shared_ptr<const LoopRlxMover> protocols::antibody_legacy::LoopRlxMoverCOP
typedef utility::pointer::shared_ptr< LoopRlxMover > protocols::antibody_legacy::LoopRlxMoverOP

Function Documentation

void protocols::antibody_legacy::read_H3_cter_fragment ( Antibody &  antibody_in,
utility::vector1< core::fragment::FragData > &  H3_base_library,
bool  is_camelid 
)
void protocols::antibody_legacy::read_H3_cter_fragment ( Antibody &  antibody_in,
utility::vector1< fragment::FragData > &  H3_base_library,
bool  is_camelid 
)
void protocols::antibody_legacy::simple_fold_tree ( pose::Pose pose_in,
core::Size  jumppoint1,
core::Size  cutpoint,
core::Size  jumppoint2 
)
void protocols::antibody_legacy::simple_one_loop_fold_tree ( pose::Pose pose_in,
loops::Loop const &  loop 
)