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protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger Member List

This is the complete list of members for protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger, including all inherited members.

apply(core::pose::Pose &pose_to_visualize) overrideprotocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgervirtual
clear_info()protocols::moves::Moverinlinevirtual
clone() constprotocols::moves::Movervirtual
create()protocols::moves::Movervirtual
current_job_protocols::moves::Moverprivate
current_tag_protocols::moves::Moverprivate
end_res_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
figure_out_loop(core::pose::Pose const &pose)protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
fill_chainTORS_info(core::pose::Pose const &pose, utility::vector1< utility::fixedsizearray1< core::Real, 3 > > &atoms, utility::vector1< core::Real > &dt_ang, utility::vector1< core::Real > &db_ang, utility::vector1< core::Real > &db_len, core::Size const &start_res_, core::Size const &end_res_) constprotocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
fix_phi_psi_offsets(core::pose::Pose &pose) constprotocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
fresh_instance() constprotocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() constprotocols::moves::Mover
get_current_tag() constprotocols::moves::Moverinline
get_input_pose() constprotocols::moves::Mover
get_last_move_status() constprotocols::moves::Mover
get_name() const overrideprotocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgervirtual
get_native_pose() constprotocols::moves::Mover
get_self_ptr() constprotocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() constprotocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() constprotocols::moves::Moverinline
grab_main_chain_torsion_set_list(core::pose::Pose const &pose)protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
idl_C_N_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
idl_C_N_CA_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
idl_CA_C_N_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
info()protocols::moves::Moverinlinevirtual
info() constprotocols::moves::Moverinlinevirtual
info_protocols::moves::Moverprivate
initialize_is_fixed_res(utility::vector1< core::Size > const &fixed_res, std::string const &working_sequence)protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
input_pose_protocols::moves::Moverprivate
is_fixed_res_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
is_pre_proline_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
KIC_loop_close(core::pose::Pose &pose)protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
KIC_loop_close_with_perturbations(core::pose::Pose &pose)protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
last_status_protocols::moves::Moverprivate
loop_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
main_chain_torsion_set_lists() constprotocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger
main_chain_torsion_sets_for_moving_residues_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
middle_offset_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
middle_res_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
native_pose_protocols::moves::Moverprivate
num_perturb_steps_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
OMEGA_MEAN_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
output_chainTORS(utility::vector1< core::Real > const &dt_ang, utility::vector1< core::Real > const &db_ang, utility::vector1< core::Real > const &db_len) constprotocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)protocols::moves::Movervirtual
perturb_torsion_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
phi_offsets_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
Pose typedefprotocols::moves::Mover
pose_count_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
PoseCOP typedefprotocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) constprotocols::moves::Movervirtual
psi_offsets_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
ramachandran_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() constprotocols::moves::Movervirtual
reinitialize_for_new_input() constprotocols::moves::Movervirtual
reset_status()protocols::moves::Mover
sample_omega_recursively(core::pose::Pose &pose, int const offset, utility::vector1< utility::fixedsizearray1< core::Real, 3 > > &atoms, utility::vector1< core::Real > &dt_ang, utility::vector1< core::Real > &db_ang, utility::vector1< core::Real > &db_len, utility::vector1< core::Size > const &pivots, utility::vector1< core::Size > const &order)protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
sampler_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
save_phi_psi_offsets(core::pose::Pose const &pose)protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
seg_len_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_type(std::string const &setting)protocols::moves::Moverinline
setup_torsions(core::pose::Pose const &pose)protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
show(std::ostream &output=std::cout) constprotocols::moves::Movervirtual
start_res_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
StepWiseProteinKIC_LoopBridger(sampler::StepWiseSamplerSizedOP sampler, protocols::stepwise::modeler::working_parameters::StepWiseWorkingParametersCOP working_parameters)protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type(const std::string &type_in)protocols::moves::Moverinline
type() constprotocols::moves::Moverinline
type_protocols::moves::Moverprivate
use_icoor_geometry_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
verbose_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
which_torsions() constprotocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger
which_torsions_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
working_bridge_res_protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridgerprivate
~StepWiseProteinKIC_LoopBridger() overrideprotocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger