protocols::protein_interface_design::filters::InterfaceHolesFilter Class Reference

#include <InterfaceHolesFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::InterfaceHolesFilter:

Public Member Functions
	InterfaceHolesFilter ()
	InterfaceHolesFilter (core::Size const rb_jump, core::Real const threshold)
bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...
protocols::filters::FilterOP	clone () const override
protocols::filters::FilterOP	fresh_instance () const override
	InterfaceHolesFilter (InterfaceHolesFilter const &init)
void	report (std::ostream &out, core::pose::Pose const &pose) const override
core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...
core::Real	compute (core::pose::Pose const &pose) const
	~InterfaceHolesFilter () override
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
std::string	name () const override
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	~Filter () override
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
core::Size	rb_jump_
core::Real	threshold_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

InterfaceHolesFilter() [1/3]

protocols::protein_interface_design::filters::InterfaceHolesFilter::InterfaceHolesFilter ( )

inline

InterfaceHolesFilter() [2/3]

protocols::protein_interface_design::filters::InterfaceHolesFilter::InterfaceHolesFilter ( core::Size const  rb_jump, core::Real const  threshold  )

inline

References rb_jump_, and threshold_.

InterfaceHolesFilter() [3/3]

protocols::protein_interface_design::filters::InterfaceHolesFilter::InterfaceHolesFilter ( InterfaceHolesFilter const &  init )

inline

References core::init::init(), rb_jump_, and threshold_.

~InterfaceHolesFilter()

protocols::protein_interface_design::filters::InterfaceHolesFilter::~InterfaceHolesFilter ( )

overridedefault

Member Function Documentation

apply()

bool protocols::protein_interface_design::filters::InterfaceHolesFilter::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), threshold_, and protocols::protein_interface_design::filters::TR().

class_name()

std::string protocols::protein_interface_design::filters::InterfaceHolesFilter::class_name ( )

static

Referenced by protocols::protein_interface_design::filters::InterfaceHolesFilterCreator::keyname(), name(), and provide_xml_schema().

clone()

protocols::filters::FilterOP protocols::protein_interface_design::filters::InterfaceHolesFilter::clone ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

compute()

core::Real protocols::protein_interface_design::filters::InterfaceHolesFilter::compute

(

core::pose::Pose const &

pose

)

const

References protocols::scoring::Interface::calculate(), core::pose::Pose::energies(), core::scoring::holes_decoy, rb_jump_, core::scoring::Energies::total_energies(), protocols::protein_interface_design::filters::TR(), and protocols::toolbox::rigid_body::translate().

Referenced by apply(), report(), and report_sm().

fresh_instance()

protocols::filters::FilterOP protocols::protein_interface_design::filters::InterfaceHolesFilter::fresh_instance ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

name()

std::string protocols::protein_interface_design::filters::InterfaceHolesFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

parse_my_tag()

void protocols::protein_interface_design::filters::InterfaceHolesFilter::parse_my_tag ( utility::tag::TagCOP  , basic::datacache::DataMap &    )

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References rb_jump_, threshold_, and protocols::protein_interface_design::filters::TR().

provide_xml_schema()

void protocols::protein_interface_design::filters::InterfaceHolesFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::protein_interface_design::filters::InterfaceHolesFilterCreator::provide_xml_schema().

report()

void protocols::protein_interface_design::filters::InterfaceHolesFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute(), core::conformation::membrane::out, and rb_jump_.

report_sm()

core::Real protocols::protein_interface_design::filters::InterfaceHolesFilter::report_sm ( core::pose::Pose const &  ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

rb_jump_

core::Size protocols::protein_interface_design::filters::InterfaceHolesFilter::rb_jump_

private

Referenced by compute(), InterfaceHolesFilter(), parse_my_tag(), and report().

threshold_

core::Real protocols::protein_interface_design::filters::InterfaceHolesFilter::threshold_

private

Referenced by apply(), InterfaceHolesFilter(), and parse_my_tag().

---

The documentation for this class was generated from the following files:

• src/protocols/protein_interface_design/filters/InterfaceHolesFilter.hh
• src/protocols/protein_interface_design/filters/InterfaceHolesFilter.cc