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FragmentPicker.hh File Reference

Fragment picker - the core part of picking machinery. More...

#include <protocols/frag_picker/FragmentPicker.fwd.hh>
#include <protocols/frag_picker/ContactCounts.hh>
#include <protocols/frag_picker/VallProvider.hh>
#include <protocols/frag_picker/VallChunk.fwd.hh>
#include <protocols/frag_picker/VallChunkFilter.hh>
#include <protocols/frag_picker/CandidatesCollector.hh>
#include <protocols/frag_picker/FragmentSelectingRule.hh>
#include <protocols/frag_picker/scores/FragmentScoreManager.hh>
#include <protocols/frag_picker/scores/AtomPairConstraintsScore.hh>
#include <protocols/frag_picker/scores/PValuedFragmentScoreManager.hh>
#include <protocols/frag_picker/FragmentCandidate.hh>
#include <protocols/frag_picker/scores/FragmentScoreMap.fwd.hh>
#include <protocols/frag_picker/SidechainContactDistCutoff.hh>
#include <protocols/frag_picker/nonlocal/NonlocalPair.hh>
#include <protocols/frag_picker/ContactTypes.hh>
#include <protocols/frag_picker/quota/QuotaCollector.fwd.hh>
#include <core/types.hh>
#include <core/fragment/SecondaryStructure.hh>
#include <core/sequence/SequenceProfile.hh>
#include <core/fragment/ConstantLengthFragSet.fwd.hh>
#include <utility/VirtualBase.hh>
#include <utility/vector1.hh>
#include <basic/thread_manager/RosettaThreadAssignmentInfo.fwd.hh>
#include <string>
#include <map>
#include <iosfwd>
#include <set>

Classes

class  protocols::frag_picker::QuotaDebug
 
class  protocols::frag_picker::FragmentPicker
 The core of the fragment picking machinery. More...
 

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::frag_picker
 

Typedefs

typedef std::pair< core::Size,
core::Size
protocols::frag_picker::PosPair
 
typedef std::pair
< FragmentCandidateOP,
scores::FragmentScoreMapOP > 
protocols::frag_picker::Candidate
 
typedef utility::vector1
< Candidate > 
protocols::frag_picker::Candidates
 
typedef std::map< core::Size,
CandidatesCollectorOP > 
protocols::frag_picker::CandidatesSink
 

Detailed Description

Fragment picker - the core part of picking machinery.

Author
Dominik Gront (dgron.nosp@m.t@ch.nosp@m.em.uw.nosp@m..edu.nosp@m..pl) Vikram K. Mulligan (vmull.nosp@m.igan.nosp@m.@flat.nosp@m.iron.nosp@m.insti.nosp@m.tute.nosp@m..org) – Modernized multithreading support.