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protocols::evolution Namespace Reference

Namespaces

 AlignmentCleanerTools
 

Classes

class  AASynthesisFitnessCost
 test whether a pose contains a comment that evaluates to a predefined value. This is useful in controlling execution flow in RosettaScripts. More...
 
class  AASynthesisFitnessCostFilterCreator
 
class  AlignmentAAFinder
 test whether a pose contains a comment that evaluates to a predefined value. This is useful in controlling execution flow in RosettaScripts. More...
 
class  AlignmentAAFinderFilterCreator
 
class  AlignmentGapInserter
 test whether a pose contains a comment that evaluates to a predefined value. This is useful in controlling execution flow in RosettaScripts. More...
 
class  AlignmentGapInserterFilterCreator
 
class  EvolutionaryDynamicsMover
 
class  EvolutionaryDynamicsMoverCreator
 
class  NucleotideMutation
 designs alanine residues in place of the residue identities at the interface. Retains interface glycines and prolines. More...
 
class  NucleotideMutationCreator
 

Typedefs

typedef
utility::pointer::shared_ptr
< PoseComment > 
PoseCommentOP
 
typedef
utility::pointer::shared_ptr
< PoseComment const > 
PoseCommentCOP
 
using bools = utility::vector1< bool >
 
typedef
utility::pointer::shared_ptr
< EvolutionaryDynamicsMover
EvolutionaryDynamicsMoverOP
 
typedef
utility::pointer::shared_ptr
< EvolutionaryDynamicsMover
const > 
EvolutionaryDynamicsMoverCOP
 
typedef std::function< bool(core::Size,
core::Size, const
core::pose::Pose
&, core::scoring::ScoreFunctionOP)> 
EvolutionaryDynamicsMoverTrigger
 Trigger API definition. More...
 
typedef
utility::pointer::shared_ptr
< NucleotideMutation
NucleotideMutationOP
 
typedef
utility::pointer::shared_ptr
< NucleotideMutation const > 
NucleotideMutationCOP
 

Functions

static basic::Tracer TR ("protocols.evolution.AASynthesisFitnessCost")
 
static basic::Tracer TR ("protocols.evolution.AlignmentAAFinder")
 
static basic::Tracer TR ("protocols.evolution.AlignmentGapInserter")
 
static basic::Tracer TR ("protocols.evolution.NucleotideMutation")
 

Typedef Documentation

typedef utility::vector1< bool > protocols::evolution::bools

Trigger API definition.

typedef utility::pointer::shared_ptr< NucleotideMutation const > protocols::evolution::NucleotideMutationCOP
typedef utility::pointer::shared_ptr< NucleotideMutation > protocols::evolution::NucleotideMutationOP
typedef utility::pointer::shared_ptr< PoseComment const > protocols::evolution::PoseCommentCOP
typedef utility::pointer::shared_ptr< PoseComment > protocols::evolution::PoseCommentOP

Function Documentation

static basic::Tracer protocols::evolution::TR ( "protocols.evolution.AASynthesisFitnessCost"  )
static
static basic::Tracer protocols::evolution::TR ( "protocols.evolution.AlignmentAAFinder"  )
static
static basic::Tracer protocols::evolution::TR ( "protocols.evolution.AlignmentGapInserter"  )
static
static basic::Tracer protocols::evolution::TR ( "protocols.evolution.NucleotideMutation"  )
static