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util.cc File Reference
#include <protocols/topology_broker/util.hh>
#include <protocols/topology_broker/TopologyBroker.hh>
#include <protocols/topology_broker/TopologyClaimerFactory.hh>
#include <core/fragment/FragSet.hh>
#include <core/fragment/FragmentIO.hh>
#include <core/fragment/util.hh>
#include <protocols/simple_moves/FragmentMover.hh>
#include <protocols/simple_moves/SmoothFragmentMover.hh>
#include <protocols/simple_moves/GunnCost.hh>
#include <protocols/topology_broker/FragmentClaimer.hh>
#include <protocols/topology_broker/SequenceClaimer.hh>
#include <protocols/topology_broker/ConstraintClaimer.hh>
#include <protocols/topology_broker/LoopFragmentClaimer.hh>
#include <protocols/topology_broker/CutBiasClaimer.hh>
#include <core/fragment/SecondaryStructure.hh>
#include <core/pose/PDBInfo.hh>
#include <core/sequence/util.hh>
#include <core/sequence/Sequence.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/abinitio.OptionKeys.gen.hh>
#include <basic/options/keys/frags.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <utility/io/izstream.hh>
#include <basic/Tracer.hh>
#include <fstream>
#include <sstream>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/import_pose/import_pose.hh>
#include <protocols/topology_broker/weights/LargeFragWeight.hh>
#include <protocols/topology_broker/weights/SmallFragWeight.hh>
#include <protocols/topology_broker/weights/SmoothFragWeight.hh>
#include <utility/vector1.hh>
#include <basic/options/keys/broker.OptionKeys.gen.hh>

Classes

struct  protocols::topology_broker::CmdLineData
 
class  protocols::topology_broker::FragmentContainer
 

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::topology_broker
 

Functions

static basic::Tracer tr ("protocols.topo_broker", basic::t_info)
 
core::fragment::FragSetOP protocols::topology_broker::read_frags (std::istream &is, core::fragment::FragmentIO &io)
 
void protocols::topology_broker::add_claims_from_stream (TopologyBroker &broker, std::istream &is, CmdLineData &cmdline_data, utility::vector1< FragmentContainer > &fragment_list)
 
void protocols::topology_broker::add_claims_from_file (TopologyBroker &broker, std::string const &file, CmdLineData &cmdline_data, utility::vector1< FragmentContainer > &fragment_list)
 
void protocols::topology_broker::add_cmdline_claims (TopologyBroker &, bool do_I_need_frags=true)
 read broker::setup flag and add all claims to Broker More...
 

Function Documentation

static basic::Tracer tr ( "protocols.topo_broker"  ,
basic::t_info   
)
static