protocols::matdes::BuildingBlockInterfaceOperation Class Reference

#include <BuildingBlockInterfaceOperation.hh>

Inheritance diagram for protocols::matdes::BuildingBlockInterfaceOperation:

Public Member Functions
	BuildingBlockInterfaceOperation (core::Size nsub_bblock=1, std::string const &sym_dof_names="", core::Real contact_dist=10, core::Real bblock_dist=5, core::Real fa_rep_cut=3.0, bool filter_intrabb=true, bool intrabb_only=false, bool multicomponent=false)
	~BuildingBlockInterfaceOperation () override
core::pack::task::operation::TaskOperationOP	clone () const override
	Create another task operation of the type matching the most-derived version of the class. More...
void	apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
void	parse_tag (TagCOP tag, DataMap &) override
	Used to parse an xml-like tag to load parameters and properties. More...
Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
static std::string	keyname ()

Private Attributes
core::pose::PoseOP	bblock_reference_pose_
core::Size	nsub_bblock_
std::string	sym_dof_names_
core::Real	contact_dist_
core::Real	bblock_dist_
core::Real	fa_rep_cut_
bool	filter_intrabb_
bool	intrabb_only_
bool	multicomponent_

Additional Inherited Members
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Constructor & Destructor Documentation

BuildingBlockInterfaceOperation()

protocols::matdes::BuildingBlockInterfaceOperation::BuildingBlockInterfaceOperation	(	core::Size	nsub_bblock = 1,
		std::string const &	sym_dof_names = "",
		core::Real	contact_dist = 10,
		core::Real	bblock_dist = 5,
		core::Real	fa_rep_cut = 3.0,
		bool	filter_intrabb = true,
		bool	intrabb_only = false,
		bool	multicomponent = false
	)

~BuildingBlockInterfaceOperation()

protocols::matdes::BuildingBlockInterfaceOperation::~BuildingBlockInterfaceOperation ( )

overridedefault

Member Function Documentation

apply()

void protocols::matdes::BuildingBlockInterfaceOperation::apply ( core::pose::Pose const &  , core::pack::task::PackerTask &    ) const

overridevirtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::TaskOperation.

References bblock_dist_, bblock_reference_pose_, core::pose::Pose::chain(), contact_dist_, core::pose::Pose::energies(), core::scoring::fa_rep, fa_rep_cut_, filter_intrabb_, core::pose::symmetry::get_component_of_residue(), core::pose::symmetry::get_jump_name_to_subunits(), protocols::matdes::get_matching_subunits(), core::scoring::get_score_function(), intrabb_only_, multicomponent_, core::conformation::Residue::name3(), core::pack::task::PackerTask::nonconst_residue_task(), nsub_bblock_, core::pose::Pose::pdb_info(), core::pack::task::ResidueLevelTask::prevent_repacking(), core::pose::Pose::residue(), core::scoring::Energies::residue_total_energies(), core::pose::symmetry::sym_dof_names(), sym_dof_names_, core::pose::symmetry::symmetry_info(), protocols::matdes::TR(), and core::conformation::Residue::xyz().

clone()

core::pack::task::operation::TaskOperationOP protocols::matdes::BuildingBlockInterfaceOperation::clone ( ) const

overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

keyname()

static std::string protocols::matdes::BuildingBlockInterfaceOperation::keyname ( )

inlinestatic

Referenced by protocols::matdes::BuildingBlockInterfaceOperationCreator::keyname(), and provide_xml_schema().

parse_tag()

void protocols::matdes::BuildingBlockInterfaceOperation::parse_tag ( TagCOP  tag, DataMap &    )

overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References bblock_dist_, bblock_reference_pose_, contact_dist_, fa_rep_cut_, filter_intrabb_, intrabb_only_, multicomponent_, nsub_bblock_, core::import_pose::PDB_file, core::import_pose::pose_from_file(), and sym_dof_names_.

provide_xml_schema()

void protocols::matdes::BuildingBlockInterfaceOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References keyname(), and core::pack::task::operation::task_op_schema_w_attributes().

Referenced by protocols::matdes::BuildingBlockInterfaceOperationCreator::provide_xml_schema().

Member Data Documentation

bblock_dist_

core::Real protocols::matdes::BuildingBlockInterfaceOperation::bblock_dist_

private

Referenced by apply(), and parse_tag().

bblock_reference_pose_

core::pose::PoseOP protocols::matdes::BuildingBlockInterfaceOperation::bblock_reference_pose_

private

Referenced by apply(), and parse_tag().

contact_dist_

core::Real protocols::matdes::BuildingBlockInterfaceOperation::contact_dist_

private

Referenced by apply(), and parse_tag().

fa_rep_cut_

core::Real protocols::matdes::BuildingBlockInterfaceOperation::fa_rep_cut_

private

Referenced by apply(), and parse_tag().

filter_intrabb_

bool protocols::matdes::BuildingBlockInterfaceOperation::filter_intrabb_

private

Referenced by apply(), and parse_tag().

intrabb_only_

bool protocols::matdes::BuildingBlockInterfaceOperation::intrabb_only_

private

Referenced by apply(), and parse_tag().

multicomponent_

bool protocols::matdes::BuildingBlockInterfaceOperation::multicomponent_

private

Referenced by apply(), and parse_tag().

nsub_bblock_

core::Size protocols::matdes::BuildingBlockInterfaceOperation::nsub_bblock_

private

Referenced by apply(), and parse_tag().

sym_dof_names_

std::string protocols::matdes::BuildingBlockInterfaceOperation::sym_dof_names_

private

Referenced by apply(), and parse_tag().

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The documentation for this class was generated from the following files:

• src/protocols/matdes/BuildingBlockInterfaceOperation.hh
• src/protocols/matdes/BuildingBlockInterfaceOperation.cc