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protocols::anchored_design Namespace Reference

Classes

class  Anchor
 Anchor class provides for the "anchor" part of a scaffold in anchored interface design. More...
 
class  AnchoredDesignMover
 
class  AnchoredPerturbMover
 
class  AnchoredRefineMover
 
class  AnchorMoversData
 This data class wraps all the data needed for the AnchoredDesign movers. More...
 

Typedefs

typedef
utility::pointer::shared_ptr
< Anchor
AnchorOP
 
typedef
utility::pointer::shared_ptr
< Anchor const > 
AnchorCOP
 
typedef
utility::pointer::shared_ptr
< AnchoredDesignMover
AnchoredDesignMoverOP
 
typedef
utility::pointer::shared_ptr
< AnchoredPerturbMover
AnchoredPerturbMoverOP
 
typedef
utility::pointer::shared_ptr
< AnchoredRefineMover
AnchoredRefineMoverOP
 
typedef
utility::pointer::shared_ptr
< AnchorMoversData
AnchorMoversDataOP
 
typedef
utility::pointer::shared_ptr
< AnchorMoversData const > 
AnchorMoversDataCOP
 

Functions

std::string const bad_anchorfile ("YOU_FORGOT_TO_SPECIFY_AN_ANCHOR_FILE")
 
std::string const EMPTY_STRING ("")
 
int const ANCHOR_TARGET (1)
 
void debug_dump_pose (core::pose::Pose const &pose, core::pose::PoseOP posecopy, std::string const &tag, protocols::moves::MoverOP mover)
 a local helper function, not in the header More...
 
void dump_cutpoint_info (core::pose::Pose const &pose)
 a local helper function for debugging, not in the header More...
 
core::Real const VDW_WEIGHT (2.0)
 
core::Real const CHAINBREAK_WEIGHT (10.0)
 
std::string const INTERFACE_CALC ("AnchoredDesign_InterfaceNeighborDefinitionCalculator")
 
std::string const NEIGHBORHOOD_CALC ("AnchoredDesign_NeighborhoodByDistanceCalculator")
 

Typedef Documentation

typedef utility::pointer::shared_ptr< Anchor const > protocols::anchored_design::AnchorCOP
typedef utility::pointer::shared_ptr< AnchorMoversData const > protocols::anchored_design::AnchorMoversDataCOP
typedef utility::pointer::shared_ptr< AnchorMoversData > protocols::anchored_design::AnchorMoversDataOP
typedef utility::pointer::shared_ptr< Anchor > protocols::anchored_design::AnchorOP

Function Documentation

int const protocols::anchored_design::ANCHOR_TARGET ( )
std::string const protocols::anchored_design::bad_anchorfile ( "YOU_FORGOT_TO_SPECIFY_AN_ANCHOR_FILE"  )
core::Real const protocols::anchored_design::CHAINBREAK_WEIGHT ( 10.  0)
void protocols::anchored_design::debug_dump_pose ( core::pose::Pose const &  pose,
core::pose::PoseOP  posecopy,
std::string const &  tag,
protocols::moves::MoverOP  mover 
)
void protocols::anchored_design::dump_cutpoint_info ( core::pose::Pose const &  pose)
std::string const protocols::anchored_design::EMPTY_STRING ( ""  )
std::string const protocols::anchored_design::INTERFACE_CALC ( "AnchoredDesign_InterfaceNeighborDefinitionCalculator"  )
std::string const protocols::anchored_design::NEIGHBORHOOD_CALC ( "AnchoredDesign_NeighborhoodByDistanceCalculator"  )
core::Real const protocols::anchored_design::VDW_WEIGHT ( 2.  0)