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ParsedProtocol.cc File Reference

A mover that applies a protocol parsed from a ROSETTASCRIPTS script. More...

#include <protocols/rosetta_scripts/ParsedProtocol.hh>
#include <protocols/rosetta_scripts/ParsedProtocolCreator.hh>
#include <basic/datacache/DataMapObj.hh>
#include <basic/datacache/DataMap.hh>
#include <core/pose/util.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/simple_metrics/SimpleMetric.hh>
#include <core/simple_metrics/util.hh>
#include <protocols/filters/Filter.hh>
#include <protocols/filters/BasicFilters.hh>
#include <protocols/moves/ResId.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/MoverStatus.hh>
#include <protocols/moves/NullMover.hh>
#include <protocols/moves/MoverFactory.hh>
#include <protocols/filters/FilterFactory.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <protocols/rosetta_scripts/MultiplePoseMover.hh>
#include <basic/Tracer.hh>
#include <basic/citation_manager/CitationCollection.hh>
#include <basic/citation_manager/UnpublishedModuleInfo.hh>
#include <core/kinematics/Jump.hh>
#include <core/pose/Pose.hh>
#include <core/pose/symmetry/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/Energies.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/JobOutputter.hh>
#include <protocols/jd2/util.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/tag/Tag.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <numeric/random/random.hh>
#include <numeric/random/random_permutation.hh>
#include <map>
#include <string>
#include <algorithm>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::rosetta_scripts
 

Typedefs

using protocols::rosetta_scripts::Real = core::Real
 
using protocols::rosetta_scripts::Pose = core::pose::Pose
 

Functions

static basic::Tracer protocols::rosetta_scripts::TR ("protocols.rosetta_scripts.ParsedProtocol")
 
static basic::Tracer protocols::rosetta_scripts::TR_call_order ("protocols.rosetta_scripts.ParsedProtocol_call_order")
 
static basic::Tracer protocols::rosetta_scripts::TR_report ("protocols.rosetta_scripts.ParsedProtocol.REPORT")
 
std::pair< moves::MoverOP,
std::string > 
protocols::rosetta_scripts::parse_mover_subtag (utility::tag::TagCOP const tag_ptr, basic::datacache::DataMap &data)
 
std::string protocols::rosetta_scripts::complex_type_name_for_parsed_protocol_subelement (std::string const &foo)
 

Detailed Description

A mover that applies a protocol parsed from a ROSETTASCRIPTS script.

Author
Sarel Fleishman (sarel.nosp@m.f@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu)
Luki Goldschmidt (lugo@.nosp@m.uw.e.nosp@m.du)
Vikram K. Mulligan (vmull.nosp@m.ig@u.nosp@m.w.edu) – Modified this to facilitate use of ParsedProtocols to combine movers and filters in code outside of a RosettaScripts context.