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core::pack::annealer::SequenceSymmetricAnnealer Member List

This is the complete list of members for core::pack::annealer::SequenceSymmetricAnnealer, including all inherited members.

AnnealableGraphBaseOP typedefcore::pack::annealer::SequenceSymmetricAnnealer
assign_state_to_all_nodes_immediately_core::pack::annealer::RotamerAssigningAnnealerprivate
bestenergy()core::pack::annealer::SimAnnealerBaseprotected
bestenergy_core::pack::annealer::SimAnnealerBaseprivate
bestrotamer_at_seqpos()core::pack::annealer::SimAnnealerBaseprotected
bestrotamer_at_seqpos() constcore::pack::annealer::SimAnnealerBaseprotected
bestrotamer_at_seqpos_core::pack::annealer::SimAnnealerBaseprivate
calc_freq_tempcore::pack::annealer::SimAnnealerBaseprotectedstatic
calc_rot_freq() constcore::pack::annealer::SimAnnealerBaseprotected
calc_rot_freq_core::pack::annealer::SimAnnealerBaseprivate
clear()core::pack::annealer::SimAnnealerBaseprotected
create_corresponding_mress_for_mres() constcore::pack::annealer::SequenceSymmetricAnnealer
current_rot_index()core::pack::annealer::SimAnnealerBaseprotected
current_rot_index() constcore::pack::annealer::SimAnnealerBaseprotected
current_rot_index_core::pack::annealer::SimAnnealerBaseprivate
current_to_pick_core::pack::annealer::RotamerAssigningAnnealerprivate
disallow_quench_core::pack::annealer::SimAnnealerBaseprivate
FixbbRotamerSetsCOP typedefcore::pack::annealer::RotamerAssigningAnnealer
get_annealer_observer()core::pack::annealer::SimAnnealerBaseinline
get_annealer_observer() constcore::pack::annealer::SimAnnealerBaseinline
get_calc_rot_freq() constcore::pack::annealer::SimAnnealerBase
get_hightemp() constcore::pack::annealer::SimAnnealerBaseinlineprotected
get_inneriterations() constcore::pack::annealer::SimAnnealerBase
get_lowtemp() constcore::pack::annealer::SimAnnealerBaseinlineprotected
get_outeriterations() constcore::pack::annealer::SimAnnealerBase
get_shared_residue_types(core::Size const curr_mres, utility::vector1< core::Size > const &linked_res) constcore::pack::annealer::SequenceSymmetricAnnealerprivate
get_start_with_current() constcore::pack::annealer::SimAnnealerBase
get_temperature() constcore::pack::annealer::SimAnnealerBase
hightempcore::pack::annealer::SimAnnealerBaseprotectedstatic
hightemp_core::pack::annealer::SimAnnealerBaseprivate
ig_core::pack::annealer::SequenceSymmetricAnnealerprivate
inneriterations_core::pack::annealer::SimAnnealerBaseprivate
inneriterations_scaling_core::pack::annealer::SimAnnealerBaseprivate
jump_core::pack::annealer::SimAnnealerBaseprivate
low_temp_annealing_core::pack::annealer::SimAnnealerBaseprivate
lowtempcore::pack::annealer::SimAnnealerBaseprotectedstatic
lowtemp_core::pack::annealer::SimAnnealerBaseprivate
maxouteriterationscore::pack::annealer::SimAnnealerBaseprotectedstatic
n_assigned_at_start_core::pack::annealer::RotamerAssigningAnnealerprivate
num_rots_to_pack() constcore::pack::annealer::SimAnnealerBaseinlineprotected
num_rots_to_pack(Size setting)core::pack::annealer::SimAnnealerBaseprotected
num_rots_to_pack_core::pack::annealer::SimAnnealerBaseprivate
observer_core::pack::annealer::SimAnnealerBaseprivate
outeriterations_core::pack::annealer::SimAnnealerBaseprivate
outeriterations_scaling_core::pack::annealer::SimAnnealerBaseprivate
pass_metropolis(core::PackerEnergy delta_energy) constcore::pack::annealer::SimAnnealerBase
pass_metropolis(core::PackerEnergy previous_energy, core::PackerEnergy delta_energy) constcore::pack::annealer::SimAnnealerBase
pdb_info_core::pack::annealer::SequenceSymmetricAnnealerprivate
pick_a_rotamer(int cycle)core::pack::annealer::RotamerAssigningAnnealer
pick_a_rotamer_for_node(int node) constcore::pack::annealer::RotamerAssigningAnnealer
power_mode_core::pack::annealer::SequenceSymmetricAnnealerprivate
print_linked_residues(utility::vector1< utility::vector1< core::Size > > const &corresponding_mress_for_mres) constcore::pack::annealer::SequenceSymmetricAnnealerprivate
quench() constcore::pack::annealer::SimAnnealerBase
quench_core::pack::annealer::SimAnnealerBaseprivate
record_annealer_trajectory(bool setting)core::pack::annealer::SequenceSymmetricAnnealer
record_annealer_trajectory_core::pack::annealer::SequenceSymmetricAnnealerprivate
residue_subsets_core::pack::annealer::SequenceSymmetricAnnealerprivate
rot_freq()core::pack::annealer::SimAnnealerBaseprotected
rot_freq() constcore::pack::annealer::SimAnnealerBaseprotected
rot_freq_core::pack::annealer::SimAnnealerBaseprivate
rot_to_pack() constcore::pack::annealer::RotamerAssigningAnnealerprotected
rot_to_pack_core::pack::annealer::RotamerAssigningAnnealerprivate
rotamer_sets() constcore::pack::annealer::RotamerAssigningAnnealerprotected
rotamer_sets_core::pack::annealer::RotamerAssigningAnnealerprivate
RotamerAssigningAnnealer(int num_of_rot_to_pack, ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, FixbbRotamerSetsCOP p_rotamer_set, ObjexxFCL::FArray1_int &current_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq)core::pack::annealer::RotamerAssigningAnnealer
RotamerAssigningAnnealer(utility::vector0< int > &rot_to_pack, int num_of_rot_to_pack, ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, FixbbRotamerSetsCOP p_rotamer_set, ObjexxFCL::FArray1_int &current_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq)core::pack::annealer::RotamerAssigningAnnealer
RotamerSetsBaseCOP typedefcore::pack::annealer::SimAnnealerBase
rots_for_nodes_core::pack::annealer::RotamerAssigningAnnealerprivate
rs_prefix_core::pack::annealer::SequenceSymmetricAnnealerprivate
run() overridecore::pack::annealer::SequenceSymmetricAnnealervirtual
scale_inneriterations(core::PackerEnergy const si)core::pack::annealer::SimAnnealerBaseinline
scale_outeriterations(core::PackerEnergy const so)core::pack::annealer::SimAnnealerBaseinline
search_pose_for_residue_subsets(core::pose::Pose const &pose)core::pack::annealer::SequenceSymmetricAnnealerprivate
SequenceSymmetricAnnealer(core::pose::Pose const &pose, utility::vector0< int > &rot_to_pack, ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, AnnealableGraphBaseOP ig, FixbbRotamerSetsCOP rotamer_sets, ObjexxFCL::FArray1_int &current_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq, std::string const &rs_prefix)core::pack::annealer::SequenceSymmetricAnnealer
SequenceSymmetricAnnealer(core::pose::Pose const &pose, ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, AnnealableGraphBaseOP ig, FixbbRotamerSetsCOP rotamer_sets, ObjexxFCL::FArray1_int &current_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq, std::string const &rs_prefix)core::pack::annealer::SequenceSymmetricAnnealer
SequenceSymmetricAnnealer(SequenceSymmetricAnnealer const &rhs)core::pack::annealer::SequenceSymmetricAnnealerprivate
set_annealer_observer(AnnealerObserverOP obs)core::pack::annealer::SimAnnealerBaseinline
set_assign_state_to_all_nodes_immediately(bool setting)core::pack::annealer::RotamerAssigningAnnealer
set_disallow_quench(bool const &setting)core::pack::annealer::SimAnnealerBase
set_hightemp(core::PackerEnergy)core::pack::annealer::SimAnnealerBase
set_lowtemp(core::PackerEnergy)core::pack::annealer::SimAnnealerBase
set_not_to_quench()core::pack::annealer::SimAnnealerBase
set_temperature(core::PackerEnergy new_temperature)core::pack::annealer::SimAnnealerBase
set_to_quench()core::pack::annealer::SimAnnealerBase
setup_for_linked_residues()core::pack::annealer::SequenceSymmetricAnnealerprivate
setup_iterations()core::pack::annealer::SimAnnealerBase
setup_iterations(const int &num_of_state_changes)core::pack::annealer::SimAnnealerBase
setup_rots_for_node(FixbbRotamerSetsCOP rotamer_sets)core::pack::annealer::RotamerAssigningAnnealerprivate
setup_temperature(const int &nn)core::pack::annealer::SimAnnealerBase
setup_temperature(const ObjexxFCL::FArray1D< core::PackerEnergy > &loopenergy, int nn)core::pack::annealer::SimAnnealerBase
SimAnnealerBase(int num_rots_to_pack, ObjexxFCL::FArray1D_int &bestrotamer_at_seqpos, core::PackerEnergy &bestenergy, bool start_with_current, ObjexxFCL::FArray1_int &current_rot_index, bool calc_rot_freq, ObjexxFCL::FArray1D< core::PackerEnergy > &rot_freq)core::pack::annealer::SimAnnealerBase
SimAnnealerBase(const SimAnnealerBase &rhs)core::pack::annealer::SimAnnealerBaseprivate
start_with_current() constcore::pack::annealer::SimAnnealerBaseprotected
start_with_current_core::pack::annealer::SimAnnealerBaseprivate
starting_sequence_core::pack::annealer::SequenceSymmetricAnnealerprivate
temperature_core::pack::annealer::SimAnnealerBaseprivate
trajectory_file_name(std::string const &setting)core::pack::annealer::SequenceSymmetricAnnealer
trajectory_file_name_core::pack::annealer::SequenceSymmetricAnnealerprivate
update_shared_residue_map(core::Size const id, std::unordered_map< std::string, core::Size > &map) constcore::pack::annealer::SequenceSymmetricAnnealerprivate
~RotamerAssigningAnnealer() overridecore::pack::annealer::RotamerAssigningAnnealer
~SequenceSymmetricAnnealer() overridecore::pack::annealer::SequenceSymmetricAnnealer
~SimAnnealerBase() overridecore::pack::annealer::SimAnnealerBase