core::scoring::motif::Xfres Class Reference

#include <xfrags.hh>

Public Member Functions
	Xfres ()
	Xfres (char aa, char ss, Real phi, Real psi, Real omg, Real chi1=-180.0, Real chi2=-180.0, Real chi3=-180.0, Real chi4=-180.0)
char	aa () const
char	ss () const
Real	phi () const
Real	psi () const
Real	omg () const
Real	chi1 () const
Real	chi2 () const
Real	chi3 () const
Real	chi4 () const
void	aa (char aa)
void	ss (char ss)
void	phi (Real _phi)
void	psi (Real _psi)
void	omg (Real _omg)
void	chi1 (Real chi1)
void	chi2 (Real chi2)
void	chi3 (Real chi3)
void	chi4 (Real chi4)
void	place_sidechain_in_pose (core::pose::Pose &pose, int ir) const

Private Attributes
char	aa_
char	ss_
uint16_t	phi_
uint16_t	psi_
uint16_t	omg_
utility::fixedsizearray1< uint8_t, 4 >	chi_

Friends
std::ostream &	operator<< (std::ostream &out, Xfres const &x)

Constructor & Destructor Documentation

Xfres() [1/2]

core::scoring::motif::Xfres::Xfres ( )

inline

Xfres() [2/2]

core::scoring::motif::Xfres::Xfres	(	char	aa,
		char	ss,
		Real	phi,
		Real	psi,
		Real	omg,
		Real	chi1 = -180.0,
		Real	chi2 = -180.0,
		Real	chi3 = -180.0,
		Real	chi4 = -180.0
	)

References protocols::cluster::calibur::aa.

Member Function Documentation

aa() [1/2]

char core::scoring::motif::Xfres::aa ( ) const

inline

References aa_.

Referenced by core::scoring::motif::operator>>().

aa() [2/2]

void core::scoring::motif::Xfres::aa ( char  aa )

inline

References aa(), and aa_.

Referenced by aa().

chi1() [1/2]

Real core::scoring::motif::Xfres::chi1

(

)

const

References core::scoring::motif::uint8_to_real().

Referenced by core::scoring::motif::operator>>().

chi1() [2/2]

void core::scoring::motif::Xfres::chi1

(

Real

chi1

)

References core::scoring::motif::real_to_uint8().

chi2() [1/2]

Real core::scoring::motif::Xfres::chi2

(

)

const

References core::scoring::motif::uint8_to_real().

Referenced by core::scoring::motif::operator>>().

chi2() [2/2]

void core::scoring::motif::Xfres::chi2

(

Real

chi2

)

References core::scoring::motif::real_to_uint8().

chi3() [1/2]

Real core::scoring::motif::Xfres::chi3

(

)

const

References core::scoring::motif::uint8_to_real().

Referenced by core::scoring::motif::operator>>().

chi3() [2/2]

void core::scoring::motif::Xfres::chi3

(

Real

chi3

)

References core::scoring::motif::real_to_uint8().

chi4() [1/2]

Real core::scoring::motif::Xfres::chi4

(

)

const

References core::scoring::motif::uint8_to_real().

Referenced by core::scoring::motif::operator>>().

chi4() [2/2]

void core::scoring::motif::Xfres::chi4

(

Real

chi4

)

References core::scoring::motif::real_to_uint8().

omg() [1/2]

Real core::scoring::motif::Xfres::omg

(

)

const

References core::scoring::motif::uint16_to_real().

Referenced by core::scoring::motif::operator>>().

omg() [2/2]

void core::scoring::motif::Xfres::omg

(

Real

_omg

)

References core::scoring::motif::real_to_uint16().

phi() [1/2]

Real core::scoring::motif::Xfres::phi

(

)

const

References core::scoring::motif::uint16_to_real().

Referenced by core::scoring::motif::operator>>().

phi() [2/2]

void core::scoring::motif::Xfres::phi

(

Real

_phi

)

References core::scoring::motif::real_to_uint16().

place_sidechain_in_pose()

void core::scoring::motif::Xfres::place_sidechain_in_pose	(	core::pose::Pose &	pose,
		int	ir
	)		const

References protocols::cluster::calibur::aa, core::chemical::aa_from_oneletter_code(), core::conformation::ResidueFactory::create_residue(), core::pose::get_restype_for_pose(), core::chemical::ResidueTypeBase::mode(), core::chemical::name_from_aa(), core::conformation::Residue::nchi(), core::pose::Pose::replace_residue(), core::pose::Pose::residue(), core::pose::Pose::residue_type(), and core::pose::Pose::set_chi().

psi() [1/2]

Real core::scoring::motif::Xfres::psi

(

)

const

References core::scoring::motif::uint16_to_real().

Referenced by core::scoring::motif::operator>>().

psi() [2/2]

void core::scoring::motif::Xfres::psi

(

Real

_psi

)

References core::scoring::motif::real_to_uint16().

ss() [1/2]

char core::scoring::motif::Xfres::ss ( ) const

inline

References ss_.

Referenced by core::scoring::motif::operator>>().

ss() [2/2]

void core::scoring::motif::Xfres::ss ( char  ss )

inline

References ss(), and ss_.

Referenced by ss().

Friends And Related Function Documentation

operator<<

std::ostream& operator<< ( std::ostream &  out, Xfres const &  x  )

friend

Member Data Documentation

aa_

char core::scoring::motif::Xfres::aa_

private

Referenced by aa().

chi_

utility::fixedsizearray1<uint8_t,4> core::scoring::motif::Xfres::chi_

private

omg_

uint16_t core::scoring::motif::Xfres::omg_

private

phi_

uint16_t core::scoring::motif::Xfres::phi_

private

psi_

uint16_t core::scoring::motif::Xfres::psi_

private

ss_

char core::scoring::motif::Xfres::ss_

private

Referenced by ss().

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The documentation for this class was generated from the following files:

• src/core/scoring/motif/xfrags.hh
• src/core/scoring/motif/xfrags.cc