Rosetta  2020.37
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Public Types | Public Member Functions | Static Public Member Functions | Private Member Functions | Private Attributes | List of all members
protocols::simple_filters::LeastNativeLike9merFilter Class Reference

#include <LeastNativeLike9merFilter.hh>

Inheritance diagram for protocols::simple_filters::LeastNativeLike9merFilter:
Inheritance graph
[legend]

Public Types

typedef protocols::filters::Filter Super
 
typedef protocols::filters::Filter Filter
 
typedef
protocols::filters::FilterOP 
FilterOP
 
typedef core::Real Real
 
typedef core::pose::Pose Pose
 
typedef std::string String
 
typedef utility::tag::TagCOP TagCOP
 
typedef basic::datacache::DataMap DataMap
 

Public Member Functions

 LeastNativeLike9merFilter ()
 
 ~LeastNativeLike9merFilter () override
 
filters::FilterOP clone () const override
 
filters::FilterOP fresh_instance () const override
 
Real report_sm (const Pose &pose) const override
 used to report filter internals through a score or silent file More...
 
void report (std::ostream &out, const Pose &pose) const override
 
Real compute (const Pose &pose) const
 
bool apply (const Pose &pose) const override
 Returns true if the given pose passes the filter, false otherwise. More...
 
void parse_my_tag (TagCOP tag, basic::datacache::DataMap &) override
 parse xml More...
 
std::string name () const override
 
void set_report_mean_median (bool report)
 
void set_residue_selector (core::select::residue_selector::ResidueSelector const &selector)
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
 ~Filter () override
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Private Member Functions

void write_mean_median (Pose const &pose, core::Real mean, core::Real median) const
 

Private Attributes

Real filtered_value_
 
Real rmsd_lookup_thresh_
 
protocols::indexed_structure_store::SSHashedFragmentStoreSSHashedFragmentStore_
 
bool ignore_terminal_res_
 
bool only_helices_
 
bool report_mean_median_
 
core::select::residue_selector::ResidueSelectorCOP residue_selector_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::simple_filters::LeastNativeLike9merFilter::LeastNativeLike9merFilter ( )

Referenced by clone(), and fresh_instance().

protocols::simple_filters::LeastNativeLike9merFilter::~LeastNativeLike9merFilter ( )
overridedefault

Member Function Documentation

bool protocols::simple_filters::LeastNativeLike9merFilter::apply ( const Pose pose) const
overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), filtered_value_, and protocols::simple_filters::TR().

std::string protocols::simple_filters::LeastNativeLike9merFilter::class_name ( )
static
filters::FilterOP protocols::simple_filters::LeastNativeLike9merFilter::clone ( ) const
inlineoverridevirtual
LeastNativeLike9merFilter::Real protocols::simple_filters::LeastNativeLike9merFilter::compute ( const Pose pose) const
filters::FilterOP protocols::simple_filters::LeastNativeLike9merFilter::fresh_instance ( ) const
inlineoverridevirtual
std::string protocols::simple_filters::LeastNativeLike9merFilter::name ( ) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::simple_filters::LeastNativeLike9merFilter::parse_my_tag ( TagCOP  tag,
basic::datacache::DataMap &  data 
)
overridevirtual
void protocols::simple_filters::LeastNativeLike9merFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::simple_filters::LeastNativeLike9merFilter::report ( std::ostream &  out,
const Pose pose 
) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References compute().

Referenced by set_report_mean_median().

LeastNativeLike9merFilter::Real protocols::simple_filters::LeastNativeLike9merFilter::report_sm ( const Pose ) const
overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

void protocols::simple_filters::LeastNativeLike9merFilter::set_report_mean_median ( bool  report)
inline

References report(), and report_mean_median_.

void protocols::simple_filters::LeastNativeLike9merFilter::set_residue_selector ( core::select::residue_selector::ResidueSelector const &  selector)
void protocols::simple_filters::LeastNativeLike9merFilter::write_mean_median ( Pose const &  pose,
core::Real  mean,
core::Real  median 
) const
private

Member Data Documentation

Real protocols::simple_filters::LeastNativeLike9merFilter::filtered_value_
private

Referenced by apply(), and parse_my_tag().

bool protocols::simple_filters::LeastNativeLike9merFilter::ignore_terminal_res_
private

Referenced by compute(), and parse_my_tag().

bool protocols::simple_filters::LeastNativeLike9merFilter::only_helices_
private

Referenced by compute(), and parse_my_tag().

bool protocols::simple_filters::LeastNativeLike9merFilter::report_mean_median_
private
core::select::residue_selector::ResidueSelectorCOP protocols::simple_filters::LeastNativeLike9merFilter::residue_selector_
private

Referenced by compute(), and set_residue_selector().

Real protocols::simple_filters::LeastNativeLike9merFilter::rmsd_lookup_thresh_
private

Referenced by compute(), and parse_my_tag().

protocols::indexed_structure_store::SSHashedFragmentStore* protocols::simple_filters::LeastNativeLike9merFilter::SSHashedFragmentStore_
private

Referenced by compute(), and parse_my_tag().


The documentation for this class was generated from the following files: