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protocols::constraints_additional::MaxSeqSepConstraintSet Member List

This is the complete list of members for protocols::constraints_additional::MaxSeqSepConstraintSet, including all inherited members.

add_constraint(ConstraintCOP cst)core::scoring::constraints::ConstraintSet
add_constraints(ConstraintCOPs cst_list)core::scoring::constraints::ConstraintSet
add_constraints(ConstraintSetCOP const cst_set)core::scoring::constraints::ConstraintSet
add_dof_constraint(DOF_ID const &id, func::FuncOP func, ScoreType const &t=core::scoring::dof_constraint)core::scoring::constraints::ConstraintSet
add_residue_pair_constraint(Size const pos1, Size const pos2, ConstraintCOP cst)core::scoring::constraints::ConstraintSetprivate
add_sequence_constraint(aa_composition_energy::SequenceConstraintCOP cst)core::scoring::constraints::ConstraintSetprivate
AtomID typedefcore::scoring::constraints::ConstraintSet
attach_to_conformation(core::conformation::ConformationCAP conformation)core::scoring::constraints::ConstraintSet
clear()core::scoring::constraints::ConstraintSet
clear_sequence_constraints()core::scoring::constraints::ConstraintSet
clone() const overrideprotocols::constraints_additional::MaxSeqSepConstraintSetvirtual
conformation_pt_core::scoring::constraints::ConstraintSetprivate
ConstraintSet()core::scoring::constraints::ConstraintSet
ConstraintSet(ConstraintSet const &other)core::scoring::constraints::ConstraintSet
ConstraintSet(ConstraintSet const &other, core::Size start_residue, core::Size end_residue)core::scoring::constraints::ConstraintSet
ConstraintSetOP typedefprotocols::constraints_additional::MaxSeqSepConstraintSet
deep_copy(ConstraintSet const &other)core::scoring::constraints::ConstraintSetprotected
deprecated_eval_atom_derivative(id::AtomID const &atom_id, pose::Pose const &pose, ScoreFunction const &, EnergyMap const &weights, Vector &F1, Vector &F2) constcore::scoring::constraints::ConstraintSetvirtual
deprecated_eval_atom_derivative_for_residue_pairs(id::AtomID const &atom_id, pose::Pose const &pose, ScoreFunction const &, EnergyMap const &weights, Vector &F1, Vector &F2) constcore::scoring::constraints::ConstraintSetprotectedvirtual
detach_from_conformation()core::scoring::constraints::ConstraintSet
detached_clone() const overrideprotocols::constraints_additional::MaxSeqSepConstraintSetvirtual
detached_copy(ConstraintSet const &src) overrideprotocols::constraints_additional::MaxSeqSepConstraintSet
core::scoring::constraints::ConstraintSet::detached_copy(ConstraintSet const &src)core::scoring::constraints::ConstraintSetvirtual
dof_constraints_core::scoring::constraints::ConstraintSetprivate
DOF_ID typedefcore::scoring::constraints::ConstraintSet
empty_rsdcst_core::scoring::constraints::ConstraintSetprivate
eval_intrares_energy(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) constcore::scoring::constraints::ConstraintSetvirtual
eval_intrares_energy(conformation::Residue const &rsd, EnergyMap &emap) constcore::scoring::constraints::ConstraintSet
eval_multibody_atom_derivative(id::AtomID const &atom_id, pose::Pose const &pose, ScoreFunction const &, EnergyMap const &weights, Vector &F1, Vector &F2) constcore::scoring::constraints::ConstraintSetvirtual
eval_non_residue_pair_energy(core::pose::Pose const &pose, core::scoring::ScoreFunction const &sfxn, core::scoring::EnergyMap &emap) const overrideprotocols::constraints_additional::MaxSeqSepConstraintSetvirtual
get_all_constraints() constcore::scoring::constraints::ConstraintSet
has_constraints() constcore::scoring::constraints::ConstraintSetinline
has_dof_constraints() constcore::scoring::constraints::ConstraintSetinline
has_intra_residue_constraints() constcore::scoring::constraints::ConstraintSetinline
has_non_residue_pair_constraints() constcore::scoring::constraints::ConstraintSetinline
has_residue_pair_constraints() constcore::scoring::constraints::ConstraintSetinline
intra_residue_constraints_core::scoring::constraints::ConstraintSetprivate
is_empty() constcore::scoring::constraints::ConstraintSet
largest_possible_sequence_sep(core::pose::Pose const &pose) constprotocols::constraints_additional::MaxSeqSepConstraintSet
mark_revision_id_expired()core::scoring::constraints::ConstraintSetprotected
max_seq_sep() constprotocols::constraints_additional::MaxSeqSepConstraintSetinline
max_seq_sep_protocols::constraints_additional::MaxSeqSepConstraintSetprivate
MaxSeqSepConstraintSet(ConstraintSet const &other, core::kinematics::FoldTree const &f)protocols::constraints_additional::MaxSeqSepConstraintSet
MaxSeqSepConstraintSet(MaxSeqSepConstraintSet const &other)protocols::constraints_additional::MaxSeqSepConstraintSet
MaxSeqSepConstraintSet(ConstraintSet const &other, core::kinematics::ShortestPathInFoldTreeCOP sp)protocols::constraints_additional::MaxSeqSepConstraintSetprotected
MaxSeqSepConstraintSet()protocols::constraints_additional::MaxSeqSepConstraintSetprivate
n_sequence_constraints() constcore::scoring::constraints::ConstraintSet
non_residue_pair_constraints() constcore::scoring::constraints::ConstraintSetinlineprotected
non_residue_pair_constraints_core::scoring::constraints::ConstraintSetprivate
on_connection_change(core::conformation::signals::ConnectionEvent const &event)core::scoring::constraints::ConstraintSet
on_length_change(conformation::signals::LengthEvent const &event)core::scoring::constraints::ConstraintSet
operator=(ConstraintSet const &rhs) overrideprotocols::constraints_additional::MaxSeqSepConstraintSet
core::scoring::constraints::ConstraintSet::operator=(ConstraintSet const &rhs)core::scoring::constraints::ConstraintSetvirtual
Parent typedefprotocols::constraints_additional::MaxSeqSepConstraintSet
Pose typedefcore::scoring::constraints::ConstraintSet
remap_residue_positions(id::SequenceMapping const &smap)core::scoring::constraints::ConstraintSet
remapped_clone(core::pose::Pose const &src, core::pose::Pose const &dest, core::id::SequenceMappingCOP smap=nullptr) const overrideprotocols::constraints_additional::MaxSeqSepConstraintSetvirtual
remove_constraint(ConstraintCOP cst, bool object_comparison)core::scoring::constraints::ConstraintSet
remove_constraints(ConstraintCOPs cst_list, bool object_comparison)core::scoring::constraints::ConstraintSet
remove_residue_pair_constraint(Size const pos1, Size const pos2, ConstraintCOP cst, bool object_comparison)core::scoring::constraints::ConstraintSetprivate
Residue typedefcore::scoring::constraints::ConstraintSet
residue_pair_constraint_exists(int const pos1, int const pos2) const overrideprotocols::constraints_additional::MaxSeqSepConstraintSetinlinevirtual
residue_pair_constraints() constcore::scoring::constraints::ConstraintSetprotected
residue_pair_constraints_core::scoring::constraints::ConstraintSetprivate
residue_pair_constraints_begin(Size resid) constcore::scoring::constraints::ConstraintSet
residue_pair_constraints_end(Size resid) constcore::scoring::constraints::ConstraintSet
residue_pair_constraints_exists(Size const pos) constcore::scoring::constraints::ConstraintSetinlinevirtual
residue_pair_energy(Residue const &rsd1, Residue const &rsd2, Pose const &pose, core::scoring::ScoreFunction const &scorefxn, core::scoring::EnergyMap &emap) const overrideprotocols::constraints_additional::MaxSeqSepConstraintSetvirtual
ResiduePairConstraints typedefcore::scoring::constraints::ConstraintSet
ResiduePairConstraintsIterator typedefcore::scoring::constraints::ConstraintSet
revision_id() constcore::scoring::constraints::ConstraintSet
revision_id_core::scoring::constraints::ConstraintSetmutableprivate
revision_id_current_core::scoring::constraints::ConstraintSetmutableprivate
same_type_as_me(ConstraintSet const &other, bool recurse=true) const overrideprotocols::constraints_additional::MaxSeqSepConstraintSet
core::scoring::constraints::ConstraintSet::same_type_as_me(ConstraintSet const &other, bool recurse=true) constcore::scoring::constraints::ConstraintSetvirtual
sequence_constraint(core::Size const index) constcore::scoring::constraints::ConstraintSet
sequence_constraints_core::scoring::constraints::ConstraintSetprivate
set_max_seq_sep(core::Size setting)protocols::constraints_additional::MaxSeqSepConstraintSetinline
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &scfxn) constcore::scoring::constraints::ConstraintSetvirtual
setup_for_minimizing_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, kinematics::MinimizerMapBase const &minmap, ResSingleMinimizationData &res_data_cache) constcore::scoring::constraints::ConstraintSetvirtual
setup_for_minimizing_for_residue_pair(core::conformation::Residue const &rsd1, core::conformation::Residue const &rsd2, core::pose::Pose const &pose, core::scoring::ScoreFunction const &sfxn, core::kinematics::MinimizerMapBase const &minmap, core::scoring::ResSingleMinimizationData const &res1_data_cache, core::scoring::ResSingleMinimizationData const &res2_data_cache, core::scoring::ResPairMinimizationData &respair_data_cache) const overrideprotocols::constraints_additional::MaxSeqSepConstraintSetvirtual
setup_for_scoring(pose::Pose &pose, ScoreFunction const &scfxn) constcore::scoring::constraints::ConstraintSetvirtual
shallow_copy(ConstraintSet const &other, Size start, Size end)core::scoring::constraints::ConstraintSetprotected
shortest_path() constprotocols::constraints_additional::MaxSeqSepConstraintSetinline
shortest_path_protocols::constraints_additional::MaxSeqSepConstraintSetprivate
show(std::ostream &out) constcore::scoring::constraints::ConstraintSetvirtual
show_definition(std::ostream &out, core::pose::Pose const &) constcore::scoring::constraints::ConstraintSetvirtual
show_numbers(std::ostream &out) constcore::scoring::constraints::ConstraintSetvirtual
show_violations(std::ostream &out, core::pose::Pose &, core::Size verbose_level, core::Real threshold=1)protocols::constraints_additional::MaxSeqSepConstraintSet
core::scoring::constraints::ConstraintSet::show_violations(std::ostream &out, pose::Pose &, Size verbose_level, Real threshold=1) constcore::scoring::constraints::ConstraintSetvirtual
steal_def_clone(pose::Pose const &src, pose::Pose const &dest, id::SequenceMappingCOP smap=nullptr) constcore::scoring::constraints::ConstraintSetvirtual
too_far(int const pos1, int const pos2) constprotocols::constraints_additional::MaxSeqSepConstraintSet
total_residue_core::scoring::constraints::ConstraintSetprivate
~ConstraintSet() overridecore::scoring::constraints::ConstraintSet
~MaxSeqSepConstraintSet() overrideprotocols::constraints_additional::MaxSeqSepConstraintSet