#include <MPSymDockMover.hh>
Public Member Functions | |
| MPSymDockMover () | |
| Constructors ///. More... | |
| ~MPSymDockMover () override | |
| Destructor. More... | |
| protocols::moves::MoverOP | clone () const override |
| Rosetta Scripts Methods ///. More... | |
| protocols::moves::MoverOP | fresh_instance () const override |
| Create a Fresh Instance of this Mover. More... | |
| void | parse_my_tag (utility::tag::TagCOP, basic::datacache::DataMap &) override |
| Pase Rosetta Scripts Options for this Mover. More... | |
| void | apply (Pose &pose) override |
| Mover Methods ///. More... | |
| std::string | get_name () const override |
| Each derived class must specify its name. The class name. More... | |
 Public Member Functions inherited from protocols::moves::Mover | |
| Mover () | |
| virtual MoverOP | create () |
| MoverCOP | get_self_ptr () const |
| MoverOP | get_self_ptr () |
| MoverCAP | get_self_weak_ptr () const |
| MoverAP | get_self_weak_ptr () |
| Mover (std::string const &type_name) | |
| sets the type for a mover; name_ has been removed (2010/05/14) More... | |
| virtual void | test_move (Pose &pose) |
| : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More... | |
| virtual bool | reinitialize_for_each_job () const |
| Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More... | |
| virtual bool | reinitialize_for_new_input () const |
| Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More... | |
| MoverStatus | get_last_move_status () const |
| end parser interface, start Job Distributor interface///////////// More... | |
| void | reset_status () |
| resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More... | |
| virtual core::pose::PoseOP | get_additional_output () |
| Mechanism by which a mover may return multiple output poses from a single input pose. More... | |
| void | set_type (std::string const &setting) |
| Set the 'type' string. More... | |
| std::string | get_type () const |
| void | type (const std::string &type_in) |
| Set the 'type' string. More... | |
| std::string const & | type () const |
| Get the set 'type' string. More... | |
| virtual void | set_input_pose (PoseCOP pose) |
| setter for poses contained for rms More... | |
| virtual void | set_native_pose (PoseCOP pose) |
| setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More... | |
| PoseCOP | get_input_pose () const |
| PoseCOP | get_native_pose () const |
| void | set_current_job (protocols::jobdist::BasicJobCOP job) |
| jobdist::BasicJobCOP | get_current_job () const |
| virtual void | set_current_tag (std::string const &new_tag) |
| std::string | get_current_tag () const |
| A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More... | |
| virtual void | show (std::ostream &output=std::cout) const |
| Outputs details about the Mover, including current settings. More... | |
| virtual core::Real | last_proposal_density_ratio () |
| virtual void | clear_info () |
| Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More... | |
| virtual Strings & | info () |
| non-const accessor More... | |
| virtual Strings const & | info () const |
| const accessor More... | |
| virtual void | provide_citation_info (basic::citation_manager::CitationCollectionList &) const |
| Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More... | |
Static Public Member Functions | |
| static std::string | mover_name () |
| static void | provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd) |
| Static Public Member Functions inherited from protocols::moves::Mover | |
| static std::string | name () |
| static void | register_options () |
| Overload this static method if you access options within the mover. More... | |
Private Member Functions | |
| void | position_membrane_at_topology_com (core::pose::Pose &pose) |
| Setup Methods ///. More... | |
Additional Inherited Members | |
| Public Types inherited from protocols::moves::Mover | |
| typedef utility::tag::TagCOP | TagCOP |
| typedef core::pose::Pose | Pose |
| typedef core::pose::PoseCOP | PoseCOP |
| typedef std::list< std::string > | Strings |
| Protected Member Functions inherited from protocols::moves::Mover | |
| void | set_last_move_status (MoverStatus status) |
| nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More... | |
Constructor & Destructor Documentation
◆ MPSymDockMover()
| protocols::symmetric_docking::membrane::MPSymDockMover::MPSymDockMover | ( | ) |
Constructors ///.
Defualt constructor for the membrane protein symmetric docking protocol
◆ ~MPSymDockMover()
|
overridedefault |
Destructor.
Member Function Documentation
◆ apply()
|
overridevirtual |
Mover Methods ///.
Create a new copy of this mover.
Return the name of this mover (MPSymDockMover)
Apply Method: Symmetric Docking in the membrane
Setup pose for symmetry, add the membrane components to the total pose, and then perform symmetric docking
Return the Name of this mover (as seen by Rscripts)
Mover name for Rosetta Scripts Mover Methods ///
Return the name of this mover (MPSymDockMover)
Apply Method: Symmetric Docking in the membrane
Setup pose for symmetry, add the membrane components to the total pose, and then perform symmetric docking
Implements protocols::moves::Mover.
References core::pose::Pose::conformation(), core::scoring::ScoreFunctionFactory::create_score_function(), core::conformation::symmetry::FA_REP_SCORE, core::conformation::Conformation::is_membrane(), core::conformation::symmetry::is_symmetric(), and position_membrane_at_topology_com().
◆ clone()
|
overridevirtual |
Rosetta Scripts Methods ///.
Create a Clone of this mover
Reimplemented from protocols::moves::Mover.
◆ fresh_instance()
|
overridevirtual |
Create a Fresh Instance of this Mover.
Reimplemented from protocols::moves::Mover.
◆ get_name()
|
overridevirtual |
Each derived class must specify its name. The class name.
Implements protocols::moves::Mover.
References mover_name().
◆ mover_name()
|
static |
◆ parse_my_tag()
|
overridevirtual |
Pase Rosetta Scripts Options for this Mover.
Reimplemented from protocols::moves::Mover.
◆ position_membrane_at_topology_com()
|
private |
Setup Methods ///.
Position Pose at TopologyCOM
Position the initial pose at the center of mass of predicted transmembrane spanning regions of the whole complex
References core::pose::Pose::membrane_info(), protocols::membrane::symmetry::symmetrize_spans(), and protocols::membrane::geometry::Embedding::total_embed().
Referenced by apply().
◆ provide_xml_schema()
|
static |
The documentation for this class was generated from the following files:
- src/protocols/symmetric_docking/membrane/MPSymDockMover.hh
- src/protocols/symmetric_docking/membrane/MPSymDockMover.cc
