Public Types | Public Member Functions | Static Public Member Functions | Private Attributes | List of all members
protocols::task_operations::ThreadSequenceOperation Class Reference

#include <ThreadSequenceOperation.hh>

Inheritance diagram for protocols::task_operations::ThreadSequenceOperation:
Inheritance graph

Public Types

typedef RestrictOperationsBase parent
- Public Types inherited from protocols::task_operations::RestrictOperationsBase
typedef core::pack::task::operation::TaskOperation TaskOperation
typedef core::pack::task::operation::TaskOperationOP TaskOperationOP
typedef TaskOperation parent
- Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP TagCOP
typedef basic::datacache::DataMap DataMap
typedef pose::Pose Pose

Public Member Functions

 ThreadSequenceOperation ()
 ThreadSequenceOperation (std::string const &seq)
 ~ThreadSequenceOperation () override
TaskOperationOP clone () const override
 Create another task operation of the type matching the most-derived version of the class. More...
void target_sequence (std::string const &seq)
std::string target_sequence () const
void apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
 Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
void parse_tag (TagCOP, DataMap &) override
 Used to parse an xml-like tag to load parameters and properties. More...
core::Size start_res () const
void start_res (core::Size const s)
bool allow_design_around () const
void allow_design_around (bool const b)
core::Size chain_num () const
void chain_num (core::Size const s)
bool filter_non_aas () const
void filter_non_aas (bool const b)
- Public Member Functions inherited from protocols::task_operations::RestrictOperationsBase
 RestrictOperationsBase ()
 ~RestrictOperationsBase () override
- Public Member Functions inherited from core::pack::task::operation::TaskOperation
 ~TaskOperation () override
virtual void provide_citation_info (basic::citation_manager::CitationCollectionList &) const
 Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions

static void restrict_aas (core::Size const resi, char const aa, core::pose::Pose const &pose, core::pack::task::PackerTask &task)
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
static std::string keyname ()

Private Attributes

std::string target_sequence_
core::Size start_res_
bool allow_design_around_
core::Size chain_num_
bool filter_non_aas_

Additional Inherited Members

- Protected Member Functions inherited from protocols::task_operations::RestrictOperationsBase
void run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
 this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

◆ parent

Constructor & Destructor Documentation

◆ ThreadSequenceOperation() [1/2]

protocols::task_operations::ThreadSequenceOperation::ThreadSequenceOperation ( )

◆ ThreadSequenceOperation() [2/2]

protocols::task_operations::ThreadSequenceOperation::ThreadSequenceOperation ( std::string const &  seq)

References target_sequence().

◆ ~ThreadSequenceOperation()

protocols::task_operations::ThreadSequenceOperation::~ThreadSequenceOperation ( )

Member Function Documentation

◆ allow_design_around() [1/2]

bool protocols::task_operations::ThreadSequenceOperation::allow_design_around ( ) const

◆ allow_design_around() [2/2]

void protocols::task_operations::ThreadSequenceOperation::allow_design_around ( bool const  b)

◆ apply()

void protocols::task_operations::ThreadSequenceOperation::apply ( core::pose::Pose const &  ,
) const

◆ chain_num() [1/2]

core::Size protocols::task_operations::ThreadSequenceOperation::chain_num ( ) const

References chain_num_.

Referenced by apply(), parse_tag(), and ThreadSequenceOperation().

◆ chain_num() [2/2]

void protocols::task_operations::ThreadSequenceOperation::chain_num ( core::Size const  s)

References chain_num_.

◆ clone()

core::pack::task::operation::TaskOperationOP protocols::task_operations::ThreadSequenceOperation::clone ( ) const

Create another task operation of the type matching the most-derived version of the class.

Implements protocols::task_operations::RestrictOperationsBase.

◆ filter_non_aas() [1/2]

bool protocols::task_operations::ThreadSequenceOperation::filter_non_aas ( ) const

◆ filter_non_aas() [2/2]

void protocols::task_operations::ThreadSequenceOperation::filter_non_aas ( bool const  b)

◆ keyname()

static std::string protocols::task_operations::ThreadSequenceOperation::keyname ( )

◆ parse_tag()

void protocols::task_operations::ThreadSequenceOperation::parse_tag ( TagCOP  tag,

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References allow_design_around(), chain_num(), filter_non_aas(), start_res(), target_sequence(), and protocols::task_operations::TR().

◆ provide_xml_schema()

void protocols::task_operations::ThreadSequenceOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)

◆ restrict_aas()

void protocols::task_operations::ThreadSequenceOperation::restrict_aas ( core::Size const  resi,
char const  aa,
core::pose::Pose const &  pose,
core::pack::task::PackerTask task 

◆ start_res() [1/2]

core::Size protocols::task_operations::ThreadSequenceOperation::start_res ( ) const

◆ start_res() [2/2]

void protocols::task_operations::ThreadSequenceOperation::start_res ( core::Size const  s)

References start_res_.

◆ target_sequence() [1/2]

std::string protocols::task_operations::ThreadSequenceOperation::target_sequence ( ) const

◆ target_sequence() [2/2]

void protocols::task_operations::ThreadSequenceOperation::target_sequence ( std::string const &  seq)

Member Data Documentation

◆ allow_design_around_

bool protocols::task_operations::ThreadSequenceOperation::allow_design_around_

Referenced by allow_design_around().

◆ chain_num_

core::Size protocols::task_operations::ThreadSequenceOperation::chain_num_

Referenced by chain_num().

◆ filter_non_aas_

bool protocols::task_operations::ThreadSequenceOperation::filter_non_aas_

Referenced by filter_non_aas().

◆ start_res_

core::Size protocols::task_operations::ThreadSequenceOperation::start_res_

Referenced by start_res().

◆ target_sequence_

std::string protocols::task_operations::ThreadSequenceOperation::target_sequence_

Referenced by apply(), and target_sequence().

The documentation for this class was generated from the following files: