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Public Types | Public Member Functions | Static Public Member Functions | Private Attributes | List of all members
protocols::task_operations::ThreadSequenceOperation Class Reference

#include <ThreadSequenceOperation.hh>

Inheritance diagram for protocols::task_operations::ThreadSequenceOperation:
Inheritance graph
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Public Types

typedef RestrictOperationsBase parent
 
- Public Types inherited from protocols::task_operations::RestrictOperationsBase
typedef
core::pack::task::operation::TaskOperation 
TaskOperation
 
typedef
core::pack::task::operation::TaskOperationOP 
TaskOperationOP
 
typedef TaskOperation parent
 
- Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP TagCOP
 
typedef basic::datacache::DataMap DataMap
 
typedef pose::Pose Pose
 

Public Member Functions

 ThreadSequenceOperation ()
 
 ThreadSequenceOperation (std::string const &seq)
 
 ~ThreadSequenceOperation () override
 
TaskOperationOP clone () const override
 Create another task operation of the type matching the most-derived version of the class. More...
 
void target_sequence (std::string const &seq)
 
std::string target_sequence () const
 
void apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
 Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
 
void parse_tag (TagCOP, DataMap &) override
 Used to parse an xml-like tag to load parameters and properties. More...
 
core::Size start_res () const
 
void start_res (core::Size const s)
 
bool allow_design_around () const
 
void allow_design_around (bool const b)
 
core::Size chain_num () const
 
void chain_num (core::Size const s)
 
bool filter_non_aas () const
 
void filter_non_aas (bool const b)
 
- Public Member Functions inherited from protocols::task_operations::RestrictOperationsBase
 RestrictOperationsBase ()
 
 ~RestrictOperationsBase () override
 
- Public Member Functions inherited from core::pack::task::operation::TaskOperation
 ~TaskOperation () override
 
virtual void provide_citation_info (basic::citation_manager::CitationCollectionList &) const
 Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...
 

Static Public Member Functions

static void restrict_aas (core::Size const resi, char const aa, core::pose::Pose const &pose, core::pack::task::PackerTask &task)
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 
static std::string keyname ()
 

Private Attributes

std::string target_sequence_
 
core::Size start_res_
 
bool allow_design_around_
 
core::Size chain_num_
 
bool filter_non_aas_
 

Additional Inherited Members

- Protected Member Functions inherited from protocols::task_operations::RestrictOperationsBase
void run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
 this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...
 

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::task_operations::ThreadSequenceOperation::ThreadSequenceOperation ( )
protocols::task_operations::ThreadSequenceOperation::ThreadSequenceOperation ( std::string const &  seq)

References target_sequence().

protocols::task_operations::ThreadSequenceOperation::~ThreadSequenceOperation ( )
overridedefault

Member Function Documentation

bool protocols::task_operations::ThreadSequenceOperation::allow_design_around ( ) const
inline
void protocols::task_operations::ThreadSequenceOperation::allow_design_around ( bool const  b)
inline
void protocols::task_operations::ThreadSequenceOperation::apply ( core::pose::Pose const &  ,
core::pack::task::PackerTask  
) const
overridevirtual
core::Size protocols::task_operations::ThreadSequenceOperation::chain_num ( ) const
inline

References chain_num_.

Referenced by apply(), parse_tag(), and ThreadSequenceOperation().

void protocols::task_operations::ThreadSequenceOperation::chain_num ( core::Size const  s)
inline

References chain_num_.

core::pack::task::operation::TaskOperationOP protocols::task_operations::ThreadSequenceOperation::clone ( ) const
overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements protocols::task_operations::RestrictOperationsBase.

bool protocols::task_operations::ThreadSequenceOperation::filter_non_aas ( ) const
inline
void protocols::task_operations::ThreadSequenceOperation::filter_non_aas ( bool const  b)
inline
static std::string protocols::task_operations::ThreadSequenceOperation::keyname ( )
inlinestatic
void protocols::task_operations::ThreadSequenceOperation::parse_tag ( TagCOP  tag,
DataMap  
)
overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References allow_design_around(), chain_num(), filter_non_aas(), start_res(), target_sequence(), and protocols::task_operations::TR().

void protocols::task_operations::ThreadSequenceOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::task_operations::ThreadSequenceOperation::restrict_aas ( core::Size const  resi,
char const  aa,
core::pose::Pose const &  pose,
core::pack::task::PackerTask task 
)
static
core::Size protocols::task_operations::ThreadSequenceOperation::start_res ( ) const
void protocols::task_operations::ThreadSequenceOperation::start_res ( core::Size const  s)

References start_res_.

void protocols::task_operations::ThreadSequenceOperation::target_sequence ( std::string const &  seq)
std::string protocols::task_operations::ThreadSequenceOperation::target_sequence ( ) const

Member Data Documentation

bool protocols::task_operations::ThreadSequenceOperation::allow_design_around_
private

Referenced by allow_design_around().

core::Size protocols::task_operations::ThreadSequenceOperation::chain_num_
private

Referenced by chain_num().

bool protocols::task_operations::ThreadSequenceOperation::filter_non_aas_
private

Referenced by filter_non_aas().

core::Size protocols::task_operations::ThreadSequenceOperation::start_res_
private

Referenced by start_res().

std::string protocols::task_operations::ThreadSequenceOperation::target_sequence_
private

Referenced by apply(), and target_sequence().


The documentation for this class was generated from the following files: