Rosetta  2021.16
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Namespaces | Functions
AlignmentCleanerTools.cc File Reference
#include <protocols/evolution/AlignmentCleanerTools.hh>
#include <protocols/task_operations/ThreadSequenceOperation.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <core/pose/symmetry/util.hh>
#include <core/scoring/ScoreFunction.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::evolution
 
 protocols::evolution::AlignmentCleanerTools
 

Functions

static basic::Tracer protocols::evolution::AlignmentCleanerTools::TR ("protocols.evolution.AlignmentCleanerTools")
 
void protocols::evolution::AlignmentCleanerTools::thread_sequence_on_pose (core::pose::Pose &pose, std::string const &thread_seq, core::scoring::ScoreFunctionOP scorefxn)
 
std::tuple< std::string,
std::string > 
protocols::evolution::AlignmentCleanerTools::indel_motif (std::string const &aln_seq, core::Size const motif_radius, core::Size const aln_resi, std::string const &pose_ss_aln)
 
core::Real protocols::evolution::AlignmentCleanerTools::indel_motif_seq_id (std::string const &motif1, std::string const &motif2)
 
std::string protocols::evolution::AlignmentCleanerTools::short_ss_loop_filter (std::string ss, core::Size min_loop_length)